ggKbase home page

13_1_40cm_4_scaffold_3523

Search features with annotation key words

Displaying 21 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3523_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

1..1422
DNA (1422bp) protein (474aa)
bifunctional transaldolase/phosoglucose isomerase; K13810 transaldolase / glucose-6-phosphate isomerase [EC:2.2.1.2 5.3.1.9] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Bifunctional transaldolase / phosphoglucose isomerase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SG43_9BACT id=5224919 bin=16ft_combo_ws3_JS1 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
bifunctional transaldolase/phosoglucose isomerase
13_1_40cm_4_scaffold_3523_2
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

1419..3035
DNA (1617bp) protein (539aa)
Anion transporter n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF06_9BACT
anion transporter Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
Anion transporter
13_1_40cm_4_scaffold_3523_3
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3116..4576
DNA (1461bp) protein (487aa)
trimethylamine methyltransferase n=1 Tax=Serinicoccus profundi RepID=UPI000255F833
Manganese transport regulator MntR {ECO:0000313|EMBL:CCI54993.1}; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben
hypothetical protein
13_1_40cm_4_scaffold_3523_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4578..6014)
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036E062A
Amino acid permease {ECO:0000313|EMBL:GAO56766.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
amino acid permease
13_1_40cm_4_scaffold_3523_5
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6322..6933
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FUM9_STIAD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ADO75912.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella
13_1_40cm_4_scaffold_3523_6
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

Not on your lists

7274..7966
DNA (693bp) protein (231aa)
hydroxymethylglutaryl-coenzyme A synthase family protein Tax=RBG_16_Chloroflexi_54_11_curated
Hydroxymethylglutaryl-coenzyme A synthase family protein id=4968595 bin=GWA2_Elusimicrobia_69_24 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hydroxymethylglutaryl-coenzyme A synthase family protein
13_1_40cm_4_scaffold_3523_7
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

8141..9103
DNA (963bp) protein (321aa)
thiolase family protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=GWA2_Elusimicrobia_69_24_curated
Thiolase family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I6F1_CALAS
thiolase family protein
13_1_40cm_4_scaffold_3523_8
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

9106..9510
DNA (405bp) protein (135aa)
hypothetical protein; K07068 Tax=RBG_16_Chloroflexi_52_11_curated
Putative uncharacterized protein id=1847842 bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
13_1_40cm_4_scaffold_3523_9
CG_Wirth_01, Wirthbacteria, Bacteria

Not on your lists

9521..10426
DNA (906bp) protein (302aa)
Acyl CoA:acetate/3-ketoacid CoA transferase,alpha subunit (EC:2.8.3.-); K01039 glutaconate CoA-transferase, subunit A [EC:2.8.3.12] Tax=CG_Wirth_01
putative CoA-transferase alpha subunit (EC:2.8.3.-)
coenzyme A transferase id=4347737 bin=GWC2_Methylomirabilis_70_16 species=Citromicrobium sp. JLT1363 genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3523_10
CG_Wirth_01, Wirthbacteria, Bacteria

Not on your lists

10423..11280
DNA (858bp) protein (286aa)
putative 3-oxoadipate CoA-transferase subunit B Tax=CG_Wirth_01
coenzyme A transferase id=4347738 bin=GWC2_Methylomirabilis_70_16 species=Citromicrobium sp. JLT1363 genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
coenzyme A transferase family protein
13_1_40cm_4_scaffold_3523_11

Not on your lists

11333..12919
DNA (1587bp) protein (529aa)
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit n=1 Tax=uncultured archaeon A07HB70 RepID=V4ZTS5_9ARCH
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit {ECO:0000313|EMBL:ESS06165.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
glutaconate CoA-transferase family subunit A
13_1_40cm_4_scaffold_3523_12
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13001..14050
DNA (1050bp) protein (350aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:EAU65096.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EAU65096.1};; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cys
Alcohol dehydrogenase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08XA0_STIAD
alcohol dehydrogenase
13_1_40cm_4_scaffold_3523_13
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14192..15364
DNA (1173bp) protein (391aa)
purM; phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synth
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F5W5_ACIC5
13_1_40cm_4_scaffold_3523_14
unknown

Not on your lists

15378..15566
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_40cm_4_scaffold_3523_15
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

15574..16227
DNA (654bp) protein (218aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
phosphoribosylglycinamide formyltransferase
Phosphoribosylglycinamide formyltransferase, folate-dependent id=2910660 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
13_1_40cm_4_scaffold_3523_16
RLO_PLX_64_10, Bacteria

Not on your lists

16714..17049
DNA (336bp) protein (112aa)
radC; DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
UPF0758 protein GTNG_2548 id=5032336 bin=GWA2_Elusimicrobia_51_34 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
radC; DNA repair protein
13_1_40cm_4_scaffold_3523_17
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

17119..18330
DNA (1212bp) protein (404aa)
tyrS; tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=RBG_13_Acidobacteria_68_16_curated
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NES2_DESAR
13_1_40cm_4_scaffold_3523_18
unknown

Not on your lists

comp(18327..19004)
DNA (678bp) protein (226aa)

This feature has no annotations

13_1_40cm_4_scaffold_3523_19

Not on your lists

19089..21407
DNA (2319bp) protein (773aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN25791.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane associated hydrolase id=24455394 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
membrane associated hydrolase
13_1_40cm_4_scaffold_3523_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21379..22014)
DNA (636bp) protein (212aa)
Methyltransferase family protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0JKR4_RHILV
Methyltransferase family protein {ECO:0000313|EMBL:EJC64584.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium
hypothetical protein
13_1_40cm_4_scaffold_3523_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22274..22663)
DNA (390bp) protein (130aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RBG_16_Acidobacteria_70_10_curated
V-type H(+)-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] id=14425970 bin=bin1_lowGC species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin1_lowGC organism_group=Unknown_CP
Pyrophosphate-energized proton pump
Displaying 21 items

View Taxonomy