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13_1_40cm_4_scaffold_2870

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2870_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

99..1151
DNA (1053bp) protein (351aa)
NHL repeat containing protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UV2_SOLUE
NHL repeat-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
NHL repeat-containing protein
13_1_40cm_4_scaffold_2870_2

Not on your lists

2044..2202
DNA (159bp) protein (53aa)
NHL repeat containing protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UV1_SOLUE
NHL repeat-containing protein {ECO:0000313|EMBL:AGU01672.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NHL repeat-containing protein
13_1_40cm_4_scaffold_2870_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2206..4434
DNA (2229bp) protein (743aa)
Putative xanthine dehydrogenase n=1 Tax=uncultured bacterium 66 RepID=E3T662_9BACT
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_40cm_4_scaffold_2870_4
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

4427..4906
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037DB5D5
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein Tax=GWB1_Bdellovibrionales_55_8_curated
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
13_1_40cm_4_scaffold_2870_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4903..5763
DNA (861bp) protein (287aa)
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Xanthine dehydrogenase, FAD-binding subunit id=3192854 bin=GWA1_Deltaproteobacteria_52_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
13_1_40cm_4_scaffold_2870_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

5849..6856
DNA (1008bp) protein (336aa)
Acetamidase/Formamidase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Z67_SOLUE
acetamidase/formamidase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
acetamidase/formamidase
13_1_40cm_4_scaffold_2870_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6968..7963
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1Q9_9SPHN
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_4_scaffold_2870_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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7981..9747
DNA (1767bp) protein (589aa)
Amidohydrolase 2 n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M3N6_GEODF
Uncharacterized protein {ECO:0000313|EMBL:ETX06850.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
amidohydrolase
13_1_40cm_4_scaffold_2870_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

9821..10882
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI000360DA5B
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_40cm_4_scaffold_2870_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10898..11332)
DNA (435bp) protein (145aa)
id=14627512 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_2870_11
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

11499..13364
DNA (1866bp) protein (622aa)
polyvinyl-alcohol dehydrogenase (EC:1.1.2.6)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TQ79_9BRAD
polyvinyl-alcohol dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
13_1_40cm_4_scaffold_2870_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13459..15186
DNA (1728bp) protein (576aa)
allB; allantoinase (EC:3.5.2.5)
Allantoinase {ECO:0000313|EMBL:CAN96039.1}; EC=3.5.2.5 {ECO:0000313|EMBL:CAN96039.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; S
Allantoinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8U4_SORC5
13_1_40cm_4_scaffold_2870_13
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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15183..15512
DNA (330bp) protein (110aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU3
5-hydroxyisourate hydrolase n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S2Y3_9DELT
transthyretin family protein
13_1_40cm_4_scaffold_2870_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15513..16397)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI00037159A6
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_4_scaffold_2870_15
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

16640..17812
DNA (1173bp) protein (391aa)
amidase (EC:3.5.3.9)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000364A444
Strain A contig00056, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ54169.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiotherm
13_1_40cm_4_scaffold_2870_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17714..18382)
DNA (669bp) protein (223aa)
ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; EC=5.3.1.6 {ECO:0000255|HAMAP-Rule:MF_00170};; Phosphoriboisomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; Short=PRI {ECO:0000255|HAMAP-
Ribose-5-phosphate isomerase A n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=RPIA_RHOP2
13_1_40cm_4_scaffold_2870_17
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(18379..18930)
DNA (552bp) protein (184aa)
GTP cyclohydrolase (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase I n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003766E9C
13_1_40cm_4_scaffold_2870_18
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

19230..19970
DNA (741bp) protein (247aa)
endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; K10773 endonuclease III [EC:4.2.99.18] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Endonuclease III n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5P3_CALAS
nth; DNA glycosylase/AP lyase
13_1_40cm_4_scaffold_2870_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

20622..22127
DNA (1506bp) protein (502aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=RBG_16_Acidobacteria_70_10_curated
Leucine aminopeptidase (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4J2_9AQUI
peptidase M17 leucyl aminopeptidase domain protein
13_1_40cm_4_scaffold_2870_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

22108..22353
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037CFF76
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_40cm_4_scaffold_2870_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22391..24358
DNA (1968bp) protein (656aa)
3-isopropylmalate dehydratase large subunit {ECO:0000313|EMBL:CDM66448.1}; EC=4.2.1.33 {ECO:0000313|EMBL:CDM66448.1};; EC=4.2.1.35 {ECO:0000313|EMBL:CDM66448.1};; TaxID=454194 species="Bacteria; Acido
leuC2; 3-isopropylmalate dehydratase (EC:4.2.1.33)
3-isopropylmalate dehydratase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G0G3_SORC5
13_1_40cm_4_scaffold_2870_22
unknown

Not on your lists

24615..24743
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_4_scaffold_2870_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

24944..25279
DNA (336bp) protein (112aa)
6-pyruvoyl tetrahydrobiopterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RBG_16_Euryarchaeota_68_12_curated
ptpS; putative 6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12)
Putative 6-pyruvoyl-tetrahydropterin synthase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7U3_UNCMA
13_1_40cm_4_scaffold_2870_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

25276..26196
DNA (921bp) protein (307aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:CDM66699.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyri
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein id=14426698 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
periplasmic binding protein
13_1_40cm_4_scaffold_2870_25
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26162..26479
DNA (318bp) protein (106aa)
Tetratricopeptide repeat protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQV4_SOLCM
hypothetical protein
Tetratricopeptide repeat protein {ECO:0000313|EMBL:AFD06975.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea
13_1_40cm_4_scaffold_2870_26
R_RIF_OD1_12_45_17b, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(26604..27077)
DNA (474bp) protein (158aa)
thymidylate synthase complementing protein ThyX Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_17b_curated
chl:Chy400_0381 thymidylate synthase complementing protein ThyX id=85827 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
thymidylate synthase complementing protein ThyX
13_1_40cm_4_scaffold_2870_27
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28445..31075)
DNA (2631bp) protein (877aa)
DNA ligase D, ATP-dependent n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E922_GEOBB
ligD; DNA ligase D
DNA ligase D, ATP-dependent {ECO:0000313|EMBL:ACH37159.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemid
13_1_40cm_4_scaffold_2870_28
unknown

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comp(31080..31580)
DNA (501bp) protein (167aa)

This feature has no annotations

Displaying 28 items

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