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13_1_40cm_4_scaffold_1942

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1942_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2..745)
DNA (744bp) protein (248aa)
ABC transporter related protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLE9_MOOTA
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
ABC transporter
13_1_40cm_4_scaffold_1942_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(747..2459)
DNA (1713bp) protein (571aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLF0_MOOTA
binding-protein dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein Tax=RBG_16_Euryarchaeota_67_27_curated
binding-protein dependent transport system inner membrane protein
13_1_40cm_4_scaffold_1942_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2520..3449)
DNA (930bp) protein (310aa)
ornithine carbamoyltransferase (EC:2.1.3.3); K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Ornithine carbamoyltransferase, catabolic n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HNX1_ACIS0
ornithine carbamoyltransferase
13_1_40cm_4_scaffold_1942_trna_1
unknown

Not on your lists

3789..3862
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_1942_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

4004..8284
DNA (4281bp) protein (1427aa)
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
ileS; isoleucyl-tRNA ligase (EC:6.1.1.5)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037EC543
13_1_40cm_4_scaffold_1942_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8336..9046)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000368BEB5
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_1942_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(9043..10209)
DNA (1167bp) protein (389aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D6I3_METSW
hypothetical protein; K09123 hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_1942_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10210..10629)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZ85_METFV
hypothetical protein; K07581 hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_1942_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10619..11149)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000373C57C
dephospho-CoA kinase Tax=RBG_16_Euryarchaeota_68_12_curated
dephospho-CoA kinase
13_1_40cm_4_scaffold_1942_9
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(11197..11667)
DNA (471bp) protein (157aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
13_1_40cm_4_scaffold_1942_10
unknown

Not on your lists

11979..12071
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_4_scaffold_1942_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

12671..13690
DNA (1020bp) protein (340aa)
pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] Tax=RBG_16_Euryarchaeota_68_12_curated
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ICS1_ACIB4
pyridoxine biosynthesis protein
13_1_40cm_4_scaffold_1942_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(13644..14633)
DNA (990bp) protein (330aa)
GTPase, putative n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IEN3_ACIB4
small GTP-binding protein; K06943 nucleolar GTP-binding protein Tax=RBG_16_Euryarchaeota_68_12_curated
small GTP-binding protein
13_1_40cm_4_scaffold_1942_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(14663..15199)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000370E17A
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_1942_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(15257..16195)
DNA (939bp) protein (313aa)
Wyosine biosynthesis protein TYW1 n=1 Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HM98_ACIS0
wyosine biosynthesis protein TYW1 Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
wyosine biosynthesis protein TYW1
13_1_40cm_4_scaffold_1942_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

16284..16958
DNA (675bp) protein (225aa)
yuaG; hypothetical protein; K07192 flotillin Tax=RBG_16_Euryarchaeota_68_12_curated
Band 7 protein id=4358084 bin=GWF2_Lentisphaerae_50_93 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
13_1_40cm_4_scaffold_1942_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(16960..17463)
DNA (504bp) protein (168aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_1942_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(17522..18964)
DNA (1443bp) protein (481aa)
Replication factor C large subunit n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TAB9_9EURY
Replication factor C large subunit Tax=RBG_16_Euryarchaeota_68_12_curated
Replication factor C large subunit
13_1_40cm_4_scaffold_1942_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(19055..19195)
DNA (141bp) protein (47aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_1942_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(19349..20101)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003723D67
site-specific recombinase for integration and excision Tax=RBG_16_Euryarchaeota_68_12_curated
site-specific recombinase for integration and excision
13_1_40cm_4_scaffold_1942_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(20105..20980)
DNA (876bp) protein (292aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VQ41_9EURY
site-specific recombinase for integration and excision Tax=RBG_16_Euryarchaeota_68_12_curated
site-specific recombinase for integration and excision
13_1_40cm_4_scaffold_1942_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(21230..21505)
DNA (276bp) protein (92aa)
hydroxymethylglutaryl-CoA reductase (EC:1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_16_Euryarchaeota_68_12_curated
hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.88)
Hydroxymethylglutaryl-CoA reductase, degradative n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ICX3_ACIB4
13_1_40cm_4_scaffold_1942_22
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(21502..21981)
DNA (480bp) protein (160aa)
hmgA-1; hydroxymethylglutaryl-CoA reductase, degradative (EC:1.1.1.34 1.1.1.88); K00054 hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
3-hydroxy-3-methylglutaryl-coenzyme A reductase n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BN62_9EURY
Hydroxymethylglutaryl-CoA reductase
13_1_40cm_4_scaffold_1942_23
unknown

Not on your lists

22838..23125
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_4_scaffold_1942_24
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(23515..23940)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035E644D
TM2 domain-containing protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_4_scaffold_1942_25
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

24150..25514
DNA (1365bp) protein (455aa)
Hydrophobic amino acid ABC transporter (HAAT) family, periplasmic amino acid-binding protein n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JNB6_SYNJB
hydrophobic amino acid ABC transporter amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_16_Euryarchaeota_68_13_curated
hydrophobic amino acid ABC transporter periplasmic amino acid-binding protein
13_1_40cm_4_scaffold_1942_26
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(25516..26367)
DNA (852bp) protein (284aa)
ABC transporter-like protein (EC:3.6.3.27); K11958 neutral amino acid transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_67_27_curated
High-affinity branched-chain amino acid transport ATP-binding protein F n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BKG1_HYPBU
high-affinity branched-chain amino acid transport ATP-binding protein F
13_1_40cm_4_scaffold_1942_27
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(26372..27154)
DNA (783bp) protein (261aa)
ABC transport system protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SUB5_9BACT
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Euryarchaeota_68_13_curated
abc05a2; branched chain amino acid ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_1942_28
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(27157..28089)
DNA (933bp) protein (311aa)
Inner-membrane translocator n=2 Tax=Thauera RepID=C4ZMW3_THASP
hydrophobic amino acid ABC transporter permease Tax=RBG_16_Euryarchaeota_68_13_curated
inner-membrane translocator
13_1_40cm_4_scaffold_1942_29
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(28133..29161)
DNA (1029bp) protein (343aa)
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5E1H0_9FIRM
hydrophobic amino acid ABC transporter permease Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hydrophobic amino acid ABC transporter permease
Displaying items 1-30 of 31 in total

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