ggKbase | organisms

Consensus taxonomy: Euryarchaeota → Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_40cm_4_UNK

Properties

Avg. coverage: 12.06 Longest contig: 43.14 Kbp Bin length: 27.61 Mbp GC content: 62.74 %

Contigs count: 11446 Features count: 36114 rRNAs count: 0 tRNAs count: 275

Genome completeness

megabin RP 34 / 55 MC: 33 BSCG 23 / 51 MC: 18 ASCG 38 / 38 MC: 38

Displaying items 10951-11000 of 11446 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_4_scaffold_238988 Species: RBG_16_Euryarchaeota_68_12_curated (100%)	2	1063 bp	67.45	8.47	100.19
13_1_40cm_4_scaffold_239850 Species: RBG_16_Euryarchaeota_67_27_curated (100%)	2	1060 bp	64.53	2.26	100.19
13_1_40cm_4_scaffold_265504 Species: Methanoculleus bourgensis (50%)	2	1587 bp	68.87	11.34	100.19
13_1_40cm_4_scaffold_116673 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1584 bp	67.17	9.09	100.19
13_1_40cm_4_scaffold_241603 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1054 bp	69.92	2.99	100.19
13_1_40cm_4_scaffold_221964 Species: Thermoplasmatales archaeon Gpl (50%)	2	1581 bp	50.73	21.79	100.19
13_1_40cm_4_scaffold_117097 Species: uncultured marine group II/III euryarchaeote KM3_187_C07 (50%)	2	1581 bp	51.74	3.42	100.19
13_1_40cm_4_scaffold_489609 Species: Halogeometricum pallidum (50%)	2	1051 bp	62.04	3.71	100.19
13_1_40cm_4_scaffold_557863 Species: Halarchaeum acidiphilum (50%)	2	1051 bp	75.64	2.71	100.19
13_1_40cm_4_scaffold_243227 Species: RBG_16_Euryarchaeota_67_27_curated (100%)	2	1048 bp	64.22	14.03	100.19
13_1_40cm_4_scaffold_518113 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1048 bp	67.27	12.31	100.19
13_1_40cm_4_scaffold_244044 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	4	1045 bp	63.92	3.30	100.19
13_1_40cm_4_scaffold_206031 Species: RBG_16_Euryarchaeota_68_13_curated (66.67%)	3	1557 bp	64.87	22.45	100.19
13_1_40cm_4_scaffold_250803 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1021 bp	67.87	3.23	100.20
13_1_40cm_4_scaffold_125562 Species: RBG_16_Euryarchaeota_68_13_curated (100%)	2	1527 bp	66.93	13.56	100.20
13_1_40cm_4_scaffold_253394 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1012 bp	64.23	7.86	100.20
13_1_40cm_4_scaffold_331753 Phylum: Euryarchaeota (66.67%)	3	1509 bp	63.22	11.03	100.20
13_1_40cm_4_scaffold_276668 Species: Methanocaldococcus jannaschii (50%)	2	1506 bp	64.34	2.49	100.20
13_1_40cm_4_scaffold_72839 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	2000 bp	66.95	5.78	100.20
13_1_40cm_4_scaffold_131343 Species: RBG_16_Euryarchaeota_68_13_curated (100%)	2	1494 bp	67.20	10.24	100.20
13_1_40cm_4_scaffold_131244 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1494 bp	60.58	2.01	100.20
13_1_40cm_4_scaffold_133955 Species: Halosimplex carlsbadense (50%)	2	1479 bp	62.68	1.42	100.20
13_1_40cm_4_scaffold_134103 Species: Halosimplex carlsbadense (50%)	2	1479 bp	64.57	2.33	100.20
13_1_40cm_4_scaffold_333009 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1476 bp	61.92	4.40	100.20
13_1_40cm_4_scaffold_314782 Species: Methanosarcina horonobensis (50%)	2	1470 bp	71.84	11.43	100.20
13_1_40cm_4_scaffold_136833 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1464 bp	68.51	3.59	100.21
13_1_40cm_4_scaffold_33327 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	4	2913 bp	66.60	4.17	100.21
13_1_40cm_4_scaffold_206608 Phylum: Euryarchaeota (75%)	4	1922 bp	64.52	10.93	100.21
13_1_40cm_4_scaffold_79684 Species: Methanocella paludicola (50%)	2	1913 bp	58.02	4.55	100.21
13_1_40cm_4_scaffold_321025 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1895 bp	65.38	3.29	100.21
13_1_40cm_4_scaffold_145458 Species: Archaeoglobus fulgidus (100%)	2	1419 bp	50.81	2.85	100.21
13_1_40cm_4_scaffold_147235 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1410 bp	66.88	9.26	100.21
13_1_40cm_4_scaffold_147849 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1407 bp	52.95	1.71	100.21
13_1_40cm_4_scaffold_148363 Species: RBG_16_Euryarchaeota_68_13_curated (50%)	2	1404 bp	63.96	9.62	100.21
13_1_40cm_4_scaffold_328024 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1398 bp	67.38	4.08	100.22
13_1_40cm_4_scaffold_217938 Phylum: Euryarchaeota (80%)	5	2793 bp	66.70	27.40	100.22
13_1_40cm_4_scaffold_54566 Species: RBG_16_Euryarchaeota_68_12_curated (66.67%)	3	2302 bp	67.29	7.95	100.22
13_1_40cm_4_scaffold_247195 Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)	2	1841 bp	66.16	7.12	100.22
13_1_40cm_4_scaffold_153449 Species: Archaeoglobus profundus (50%)	2	1380 bp	40.29	4.89	100.22
13_1_40cm_4_scaffold_292616 Species: RBG_16_Euryarchaeota_67_27_curated (100%)	2	1335 bp	67.19	9.22	100.23
13_1_40cm_4_scaffold_163683 Species: uncultured marine group II/III euryarchaeote KM3_149_A03 (100%)	2	1335 bp	62.02	2.81	100.23
13_1_40cm_4_scaffold_255475 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1326 bp	67.80	2.94	100.23
13_1_40cm_4_scaffold_352632 Species: RBG_16_Euryarchaeota_67_27_curated (100%)	2	1326 bp	67.50	33.05	100.23
13_1_40cm_4_scaffold_94050 Species: Candidatus Methanoperedens nitroreducens (50%)	2	1760 bp	63.52	3.07	100.23
13_1_40cm_4_scaffold_94378 Species: RBG_16_Euryarchaeota_68_13_curated (50%)	2	1757 bp	65.40	4.95	100.23
13_1_40cm_4_scaffold_168799 Species: Ferroglobus placidus (50%)	2	1314 bp	53.20	1.94	100.23
13_1_40cm_4_scaffold_41915 Species: RBG_16_Euryarchaeota_67_27_curated (66.67%)	3	2610 bp	61.30	43.22	100.23
13_1_40cm_4_scaffold_171215 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1305 bp	64.14	10.46	100.23
13_1_40cm_4_scaffold_386365 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1299 bp	65.97	31.73	100.23
13_1_40cm_4_scaffold_174122 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1293 bp	67.21	5.34	100.23

Displaying items 10951-11000 of 11446 in total

13_1_40CM_4_Euryarchaeota_megabin_63_12

13_1_40CM_4_Euryarchaeota_63_12

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40CM_4_Euryarchaeota_megabin_63_12

13_1_40CM_4_Euryarchaeota_63_12

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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