ggKbase | organisms

Consensus taxonomy: Euryarchaeota → Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_40cm_4_UNK

Properties

Avg. coverage: 12.06 Longest contig: 43.14 Kbp Bin length: 27.61 Mbp GC content: 62.74 %

Contigs count: 11446 Features count: 36114 rRNAs count: 0 tRNAs count: 275

Genome completeness

megabin RP 34 / 55 MC: 33 BSCG 23 / 51 MC: 18 ASCG 38 / 38 MC: 38

Displaying items 11001-11050 of 11446 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_4_scaffold_175698 Species: Methanoregula formicica (50%)	2	1287 bp	55.56	3.03	100.23
13_1_40cm_4_scaffold_176364 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1284 bp	63.71	3.74	100.23
13_1_40cm_4_scaffold_176341 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1284 bp	65.89	30.26	100.23
13_1_40cm_4_scaffold_179546 Species: Candidatus Methanoperedens nitroreducens (50%)	2	1272 bp	71.70	6.49	100.24
13_1_40cm_4_scaffold_307215 Species: RBG_16_Euryarchaeota_67_27_curated (100%)	2	1266 bp	63.03	15.40	100.24
13_1_40cm_4_scaffold_182834 Species: RBG_16_Euryarchaeota_68_13_curated (100%)	2	1260 bp	63.57	2.50	100.24
13_1_40cm_4_scaffold_187057 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1245 bp	65.22	5.06	100.24
13_1_40cm_4_scaffold_187714 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1242 bp	67.23	12.44	100.24
13_1_40cm_4_scaffold_187760 Species: Halorubrum kocurii (50%)	2	1242 bp	74.88	4.59	100.24
13_1_40cm_4_scaffold_188630 Species: RBG_16_Euryarchaeota_68_13_curated (50%)	2	1239 bp	63.84	15.50	100.24
13_1_40cm_4_scaffold_442811 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1230 bp	62.68	3.66	100.24
13_1_40cm_4_scaffold_230345 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1625 bp	61.85	6.72	100.25
13_1_40cm_4_scaffold_195724 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1215 bp	64.03	7.28	100.25
13_1_40cm_4_scaffold_196563 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1212 bp	68.56	47.65	100.25
13_1_40cm_4_scaffold_355555 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1209 bp	62.12	24.57	100.25
13_1_40cm_4_scaffold_201868 Species: RBG_16_Euryarchaeota_67_27_curated (100%)	2	1194 bp	68.76	5.40	100.25
13_1_40cm_4_scaffold_116311 Species: RBG_16_Euryarchaeota_68_13_curated (100%)	2	1586 bp	64.12	46.34	100.25
13_1_40cm_4_scaffold_116314 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1586 bp	66.65	57.88	100.25
13_1_40cm_4_scaffold_203614 Species: uncultured marine group II/III euryarchaeote KM3_187_C07 (50%)	2	1188 bp	53.28	13.89	100.25
13_1_40cm_4_scaffold_203506 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1188 bp	67.85	11.49	100.25
13_1_40cm_4_scaffold_116791 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1583 bp	65.26	3.03	100.25
13_1_40cm_4_scaffold_206275 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1179 bp	63.19	4.58	100.25
13_1_40cm_4_scaffold_207050 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1176 bp	65.99	3.19	100.26
13_1_40cm_4_scaffold_37723 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	4	2744 bp	64.14	6.83	100.26
13_1_40cm_4_scaffold_402545 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1176 bp	60.80	6.12	100.26
13_1_40cm_4_scaffold_391418 Species: Haloarcula japonica (50%)	2	1173 bp	70.25	10.87	100.26
13_1_40cm_4_scaffold_209065 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1170 bp	64.27	15.13	100.26
13_1_40cm_4_scaffold_120447 Species: RBG_16_Euryarchaeota_68_13_curated (100%)	2	1559 bp	66.71	51.19	100.26
13_1_40cm_4_scaffold_42395 Class: Methanomicrobia (50%)	4	3118 bp	55.26	2.31	100.26
13_1_40cm_4_scaffold_209700 Species: RBG_16_Euryarchaeota_68_12_curated (100%)	2	1167 bp	67.78	5.27	100.26
13_1_40cm_4_scaffold_211545 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1161 bp	64.34	3.88	100.26
13_1_40cm_4_scaffold_214165 Species: Natrialba magadii (50%)	2	1152 bp	57.73	1.69	100.26
13_1_40cm_4_scaffold_250985 Species: RBG_16_Euryarchaeota_67_27_curated (100%)	2	1526 bp	62.91	3.34	100.26
13_1_40cm_4_scaffold_218391 Species: Methanosarcina siciliae (50%)	2	1523 bp	55.09	15.16	100.26
13_1_40cm_4_scaffold_218617 Species: RBG_16_Euryarchaeota_68_13_curated (100%)	2	1137 bp	61.74	18.73	100.26
13_1_40cm_4_scaffold_219459 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1134 bp	64.11	5.56	100.27
13_1_40cm_4_scaffold_220304 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1131 bp	66.40	20.56	100.27
13_1_40cm_4_scaffold_223623 Species: RBG_16_Euryarchaeota_67_27_curated (50%)	2	1119 bp	71.13	5.90	100.27
13_1_40cm_4_scaffold_223489 Species: RBG_16_Euryarchaeota_68_13_curated (100%)	2	1119 bp	63.00	11.80	100.27
13_1_40cm_4_scaffold_132114 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (66.67%)	3	1490 bp	65.97	9.77	100.27
13_1_40cm_4_scaffold_224430 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1116 bp	65.32	20.43	100.27
13_1_40cm_4_scaffold_343670 Species: RBG_16_Euryarchaeota_68_12_curated (50%)	2	1116 bp	65.41	6.85	100.27
13_1_40cm_4_scaffold_227764 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1104 bp	65.67	5.16	100.27
13_1_40cm_4_scaffold_25838 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	3282 bp	60.51	5.53	100.27
13_1_40cm_4_scaffold_230976 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)	2	1092 bp	67.58	16.90	100.28
13_1_40cm_4_scaffold_231769 Species: RBG_16_Euryarchaeota_41_19_curated (50%)	2	1089 bp	69.24	2.89	100.28
13_1_40cm_4_scaffold_276185 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1442 bp	66.30	15.19	100.28
13_1_40cm_4_scaffold_144341 Species: Methanoregula formicica (100%)	2	1424 bp	56.18	5.37	100.28
13_1_40cm_4_scaffold_517351 Species: RBG_16_Euryarchaeota_41_19_curated (50%)	2	1068 bp	62.45	3.37	100.28
13_1_40cm_4_scaffold_239241 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1062 bp	68.27	4.52	100.28

Displaying items 11001-11050 of 11446 in total

13_1_40CM_4_Euryarchaeota_megabin_63_12

13_1_40CM_4_Euryarchaeota_63_12

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40CM_4_Euryarchaeota_megabin_63_12

13_1_40CM_4_Euryarchaeota_63_12

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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