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13_2_20cm_scaffold_1541

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1541_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2..385
DNA (384bp) protein (128aa)
multi-sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_cur
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor signal transduction histidine kinase
13_2_20cm_scaffold_1541_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

378..1058
DNA (681bp) protein (227aa)
OmpR family response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-binding response regulator id=1746127 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
OmpR family response regulator
13_2_20cm_scaffold_1541_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1091..2038
DNA (948bp) protein (316aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_2_20cm_scaffold_1541_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2046..2696
DNA (651bp) protein (217aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_2_20cm_scaffold_1541_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2740..4086
DNA (1347bp) protein (449aa)
M16B family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Putative Zn-dependent peptidase id=2874868 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1541_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4083..5393
DNA (1311bp) protein (437aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Processing peptidase id=2874872 bin=GWC2_Methylomirabilis_70_16 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1541_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(5413..5607)
DNA (195bp) protein (65aa)
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_2_20cm_scaffold_1541_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5833..6699
DNA (867bp) protein (289aa)
putative VacJ-like lipoprotein; K04754 lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipoprotein
13_2_20cm_scaffold_1541_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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6701..7639
DNA (939bp) protein (313aa)
Putative uncharacterized protein id=2475294 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
putative cytochrome c
13_2_20cm_scaffold_1541_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7778..9124
DNA (1347bp) protein (449aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1V3_DESTA id=5223401 bin=16ft_combo_ws3_JS1 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sigma-54-dependent transcriptional response regulator
13_2_20cm_scaffold_1541_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9350..10945
DNA (1596bp) protein (532aa)
Pc22g03720 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3461025 bin=GWA2_Methylomirabilis_73_35 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
autotransporter-associated beta strand repeat-containing protein
13_2_20cm_scaffold_1541_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10983..11567
DNA (585bp) protein (195aa)
Response regulator receiver modulated metal dependent phosphohydrolase id=3461027 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Response regulator receiver modulated metal dependent phosphohydrolase Tax=GWA2_Rokubacteria_73_35_curated
Fis family transcriptional regulator
13_2_20cm_scaffold_1541_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11557..12465
DNA (909bp) protein (303aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=3461027 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_2_20cm_scaffold_1541_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12462..12836
DNA (375bp) protein (125aa)
spo0F; stage 0 sporulation protein F (EC:2.7.3.-); K02490 two-component system, response regulator, stage 0 sporulation protein F Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) id=3461031 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein
13_2_20cm_scaffold_1541_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12845..13639
DNA (795bp) protein (265aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 11 id=3461034 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces hygroscopicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative methyltransferase
13_2_20cm_scaffold_1541_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13852..14382
DNA (531bp) protein (177aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
yqeM; methyltransferase domain protein Tax=GWA2_Rokubacteria_73_35_curated
Putative methyltransferase protein id=3461244 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1541_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14500..15168
DNA (669bp) protein (223aa)
acetyltransferase, ribosomal protein N-acetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acetyltransferase id=14626494 bin=bin7_NC10_sister species=Paenibacillus polymyxa genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyltransferase, ribosomal protein N-acetylase
13_2_20cm_scaffold_1541_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15155..16489
DNA (1335bp) protein (445aa)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative two-component hybrid sensor and regulator id=14626495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
diguanylate cyclase and metal dependent phosphohydrolase
Displaying 18 items

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