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13_2_20cm_scaffold_2423

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2423_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

194..499
DNA (306bp) protein (102aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2780637 bin=GWA2_Methylomirabilis_73_35 species=Pleurocapsa minor genus=Pleurocapsa taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2423_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(504..1166)
DNA (663bp) protein (221aa)
hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative hydrolase id=4350137 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hydrolase
13_2_20cm_scaffold_2423_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1208..2200)
DNA (993bp) protein (331aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase id=3662441 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_2423_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2386..3411)
DNA (1026bp) protein (342aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14) id=14625616 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14)
13_2_20cm_scaffold_2423_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3408..4415)
DNA (1008bp) protein (336aa)
alcohol dehydrogenase (EC:1.1.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alcohol dehydrogenase (EC:1.1.1.1) id=14625617 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase (EC:1.1.1.1)
13_2_20cm_scaffold_2423_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4518..5399)
DNA (882bp) protein (294aa)
squalene/phytoene synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
squalene/phytoene synthase id=14625618 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
squalene/phytoene synthase
13_2_20cm_scaffold_2423_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5396..6391)
DNA (996bp) protein (332aa)
hopanoid-associated sugar epimerase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hopanoid-associated sugar epimerase id=4350132 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hopanoid-associated sugar epimerase
13_2_20cm_scaffold_2423_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6699..7373)
DNA (675bp) protein (225aa)
nucleoside phosphorylase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2224624 bin=GWA2_Methylomirabilis_73_35 species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nucleoside phosphorylase
13_2_20cm_scaffold_2423_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7370..7720)
DNA (351bp) protein (117aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Radical SAM domain protein id=2224623 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2423_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7728..8675)
DNA (948bp) protein (316aa)
Fe-S protein, radical SAM family id=3818235 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM family Fe-S protein Tax=GWA2_Rokubacteria_70_23_curated
radical SAM protein
13_2_20cm_scaffold_2423_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8672..9412)
DNA (741bp) protein (247aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Membrane protein-like protein id=2224622 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_2423_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9441..11360
DNA (1920bp) protein (640aa)
shc; squalene-hopene cyclase (EC:5.4.99.17); K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
shc; squalene-hopene cyclase (EC:5.4.99.17)
Squalene-hopene cyclase id=2224621 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_2423_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11357..12151
DNA (795bp) protein (265aa)
toluene tolerance protein Ttg2B; K02066 putative ABC transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
yrbE; toluene ABC transporter subunit membrane protein id=14625626 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
yrbE; toluene ABC transporter subunit membrane protein
13_2_20cm_scaffold_2423_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12248..12991
DNA (744bp) protein (248aa)
ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative ABC transporter (ATP-binding protein) id=3917310 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
ABC transporter ATP-binding protein
13_2_20cm_scaffold_2423_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12991..13434
DNA (444bp) protein (148aa)
Mce-related protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Mce-related protein id=14625628 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Mce-related protein
13_2_20cm_scaffold_2423_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13445..14086
DNA (642bp) protein (214aa)
Uncharacterized protein id=2224572 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_2423_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14220..15293
DNA (1074bp) protein (358aa)
myo-inositol-1-phosphate synthase; K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Myo-inositol-1-phosphate synthase id=4350048 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
myo-inositol-1-phosphate synthase
13_2_20cm_scaffold_2423_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16060..18012
DNA (1953bp) protein (651aa)
Protein export membrane protein, SecD/SecF family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2216071 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Protein export membrane protein, SecD/SecF family
13_2_20cm_scaffold_2423_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18068..18571)
DNA (504bp) protein (168aa)
radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=2216072 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidiphilium taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hopanoid biosynthesis associated radical SAM protein HpnJ
Displaying 19 items

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