ggKbase home page

13_2_20cm_scaffold_2705

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2705_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..1265)
DNA (1263bp) protein (421aa)
Membrane protein insertase YidC id=2324956 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxaA; inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=GWA2_Rokubacteria_73_35_curated
protein translocase subunit YidC
13_2_20cm_scaffold_2705_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1268..1495)
DNA (228bp) protein (76aa)
Putative membrane protein insertion efficiency factor id=2324955 bin=GWA2_Methylomirabilis_73_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K08998 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_scaffold_2705_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1492..1746)
DNA (255bp) protein (85aa)
Ribonuclease P protein component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease P protein component id=2324954 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2705_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2221..3540
DNA (1320bp) protein (440aa)
dnaA; chromosomal replication initiator protein dnaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaA; chromosomal replication initiator protein dnaA id=14625297 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaA; chromosomal replication initiator protein dnaA
13_2_20cm_scaffold_2705_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3704..4708
DNA (1005bp) protein (335aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=14625298 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA polymerase III subunit beta
13_2_20cm_scaffold_2705_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4746..5819
DNA (1074bp) protein (358aa)
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA replication and repair protein RecF id=3212580 bin=GWC2_Methylomirabilis_70_16 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA replication and repair protein RecF
13_2_20cm_scaffold_2705_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5816..8194
DNA (2379bp) protein (793aa)
DNA gyrase B subunit (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] id=14625299 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA gyrase B subunit (EC:5.99.1.3)
13_2_20cm_scaffold_2705_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8210..11848
DNA (3639bp) protein (1213aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A id=2336356 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2705_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12297..13283
DNA (987bp) protein (329aa)
Putative sulfonate/nitrate transport system substrate-binding protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LMS2_9PROT rbh
Putative sulfonate/nitrate transport system substrate-binding protein {ECO:0000313|EMBL:CDX51595.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae
putative sulfonate/nitrate transport system substrate-binding protein
13_2_20cm_scaffold_2705_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13280..14083
DNA (804bp) protein (268aa)
Binding-protein dependent transport system inner membrane protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LB20_9PROT rbh
Binding-protein dependent transport system inner membrane protein {ECO:0000313|EMBL:CDX51596.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Me
binding-protein dependent transport system inner membrane protein
13_2_20cm_scaffold_2705_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14103..14879
DNA (777bp) protein (259aa)
ABC transporter ATP-binding protein n=1 Tax=Pseudomonas sp. S9 RepID=UPI00025575F4 rbh
Taurine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX51597.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae;
Uncharacterized ABC transporter ATP-binding protein
13_2_20cm_scaffold_2705_12
Nostoc sp. PCC 7120, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

14996..15400
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037E5FD0
hypothetical protein
All2017 protein {ECO:0000313|EMBL:BAB73716.1}; TaxID=103690 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain PCC 7120 / UTEX 2576).;"
13_2_20cm_scaffold_2705_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15878..16180
DNA (303bp) protein (101aa)
id=4657425 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4657425 Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_2705_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16221..17051
DNA (831bp) protein (277aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) id=4527544 bin=GWC2_Methylomirabilis_70_16 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_2705_15
unknown

Not on your lists

comp(17411..17974)
DNA (564bp) protein (188aa)

This feature has no annotations

13_2_20cm_scaffold_2705_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18078..18803
DNA (726bp) protein (242aa)
putative histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=2085288 bin=GWA2_Methylomirabilis_73_35 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PAS/PAC sensor hybrid histidine kinase
13_2_20cm_scaffold_2705_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18807..19403)
DNA (597bp) protein (199aa)
two-component system sensor protein (EC:2.7.3.-) Tax=GWA2_Rokubacteria_73_35_curated
cetoacetate metabolism regulatory protein atoC id=2772883 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two-component, sigma-54 specific, transcriptional regulator, Fis family
Displaying 17 items

View Taxonomy