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13_2_20cm_scaffold_3215

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3215_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..139
DNA (138bp) protein (46aa)
formate dehydrogenase family accessory protein (FdhD) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
formate dehydrogenase family accessory protein (FdhD) id=24540630 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_2_20cm_scaffold_3215_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

304..663
DNA (360bp) protein (120aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4703402 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3215_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

749..1027
DNA (279bp) protein (93aa)
id=24540628 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3227803 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_3215_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

1885..4017
DNA (2133bp) protein (711aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=CSP1_6_Rokubacteria
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=14628019 bin=bin7_NC10_sister species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase alpha subunit
13_2_20cm_scaffold_3215_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

4020..4796
DNA (777bp) protein (259aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit id=14627926 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
13_2_20cm_scaffold_3215_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

4796..5731
DNA (936bp) protein (312aa)
polysulfide reductase NrfD; K04015 protein NrfD Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Polysulfide reductase NrfD; K04015 protein NrfD id=14627925 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
polysulfide reductase NrfD
13_2_20cm_scaffold_3215_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6013..6591
DNA (579bp) protein (193aa)
formate dehydrogenase formation protein; K02380 FdhE protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein involved in formate dehydrogenase formation id=3227780 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
formate dehydrogenase accessory protein
13_2_20cm_scaffold_3215_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6658..7470
DNA (813bp) protein (271aa)
cytochrome c biogenesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ResC/HemX-like cytochrome c biogenesis membrane protein id=3448980 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ResC/HemX-like cytochrome c biogenesis membrane protein
13_2_20cm_scaffold_3215_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7509..8777
DNA (1269bp) protein (423aa)
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamyl-tRNA reductase id=3448982 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hemA; glutamyl-tRNA reductase
13_2_20cm_scaffold_3215_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8986..9888
DNA (903bp) protein (301aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Porphobilinogen deaminase id=3448984 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Porphobilinogen deaminase
13_2_20cm_scaffold_3215_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9934..10797
DNA (864bp) protein (288aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrin-III C-methyltransferase id=3449156 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
uroporphyrin-III C-methyltransferase
13_2_20cm_scaffold_3215_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10769..11764
DNA (996bp) protein (332aa)
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase id=3366897 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_3215_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11910..12353
DNA (444bp) protein (148aa)
Transcriptional regulator, Rrf2 family id=3942774 bin=GWA2_Methylomirabilis_73_35 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
BadM/Rrf2 family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
BadM/Rrf2 family transcriptional regulator
13_2_20cm_scaffold_3215_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12350..13270
DNA (921bp) protein (307aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Cysteine synthase id=3942773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3215_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13393..13734
DNA (342bp) protein (114aa)
Putative Molybdopterin biosynthesis protein moeB (Modular protein) id=3942772 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Molybdopterin biosynthesis protein moeB Tax=GWA2_Rokubacteria_73_35_curated
MoaD family protein
13_2_20cm_scaffold_3215_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13731..14210
DNA (480bp) protein (160aa)
Mov34/MPN/PAD-1 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Mov34/MPN/PAD-1 family protein id=3942771 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Mov34/MPN/PAD-1 family protein
13_2_20cm_scaffold_3215_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14207..15490
DNA (1284bp) protein (428aa)
glutamate-1-semialdehyde-2,1-aminomutase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=GWA2_Rokubacteria_73_35_curated
hemL; glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase id=3942770 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3215_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15575..16165
DNA (591bp) protein (197aa)
cytochrome c3 (EC:1.7.2.2)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3942769 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3215_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16320..19226
DNA (2907bp) protein (969aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14626217 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region
13_2_20cm_scaffold_3215_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19246..20043
DNA (798bp) protein (266aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14626218 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Polysulfide reductase NrfD
Displaying 20 items

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