ggKbase home page

13_2_20cm_scaffold_3039

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3039_1
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..879
DNA (879bp) protein (293aa)
Putative secreted solute-binding protein n=1 Tax=Streptomyces scabies (strain 87.22) RepID=C9YZP9_STRSW
amino acid ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG01531.1}; TaxID=1930 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei
13_2_20cm_scaffold_3039_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(908..1666)
DNA (759bp) protein (253aa)
short-chain alcohol dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Short-chain dehydrogenase id=2247805 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain alcohol dehydrogenase
13_2_20cm_scaffold_3039_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1757..2050)
DNA (294bp) protein (98aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=5017004 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_3039_4
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2770..3627
DNA (858bp) protein (286aa)
dienelactone hydrolase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
Carboxymethylenebutenolidase (EC:3.1.1.45)
carboxymethylenebutenolidase n=1 Tax=Chlorogloeopsis RepID=UPI00035DE86D
13_2_20cm_scaffold_3039_5
Legionella drancourtii, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3660..3989
DNA (330bp) protein (110aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=658187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; L
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI00037BBD82
protein of unknown function [AhpD domain]
13_2_20cm_scaffold_3039_6
unknown

Not on your lists

comp(4002..4262)
DNA (261bp) protein (87aa)

This feature has no annotations

13_2_20cm_scaffold_3039_7
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4365..5033
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QLN8_METSZ
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KJC56803.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM
13_2_20cm_scaffold_3039_8
unknown

Not on your lists

5030..5188
DNA (159bp) protein (53aa)

This feature has no annotations

13_2_20cm_scaffold_3039_9
unknown

Not on your lists

5238..5420
DNA (183bp) protein (61aa)

This feature has no annotations

13_2_20cm_scaffold_3039_10
unknown

Not on your lists

5439..6290
DNA (852bp) protein (284aa)

This feature has no annotations

13_2_20cm_scaffold_3039_11
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6477..7730
DNA (1254bp) protein (418aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C4K4_DESTA
Uncharacterized protein {ECO:0000313|EMBL:ETX02168.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
putative TIM-barrel fold metal-dependent hydrolase
13_2_20cm_scaffold_3039_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7818..8099
DNA (282bp) protein (94aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX02167.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_2_20cm_scaffold_3039_13
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(8110..10980)
DNA (2871bp) protein (957aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-133-G06 RepID=UPI0003605204 rbh
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_2_20cm_scaffold_3039_14
unknown

Not on your lists

11407..11760
DNA (354bp) protein (118aa)

This feature has no annotations

13_2_20cm_scaffold_3039_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11849..12253
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI000378E306
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thioesterase
13_2_20cm_scaffold_3039_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12465..12791
DNA (327bp) protein (109aa)
Glycine-rich RNA binding protein id=3327195 bin=GWF2_Methylomirabilis_70_14 species=Coprinopsis cinerea genus=Coprinopsis taxon_order=Agaricales taxon_class=Agaricomycetes phylum=Basidiomycota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine-rich RNA binding protein Tax=GWA2_Rokubacteria_70_23_curated
RNP-1 like RNA-binding protein
13_2_20cm_scaffold_3039_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12805..13020
DNA (216bp) protein (72aa)
id=4283019 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4283019 Tax=GWC2_Rokubacteria_70_16_curated
13_2_20cm_scaffold_3039_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13021..13224
DNA (204bp) protein (68aa)
30S ribosomal protein S21 1 id=4283020 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsU-1; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=GWC2_Rokubacteria_70_16_curated
ribosomal protein s21
13_2_20cm_scaffold_3039_19
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13249..13674
DNA (426bp) protein (142aa)
hypothetical protein id=14625184 bin=bin7_NC10_sister species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_3039_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13692..14237
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJA6_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97261.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
13_2_20cm_scaffold_3039_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14507..15205
DNA (699bp) protein (233aa)
two component, sigma54 specific, Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=5017004 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dctD; two-component response regulator, C5-dicarboxylate transport regulator
13_2_20cm_scaffold_3039_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15413..15721
DNA (309bp) protein (103aa)
id=14626867 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
Displaying 22 items

View Taxonomy