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13_2_20cm_scaffold_3430

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3430_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..357)
DNA (357bp) protein (119aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c family protein id=4062400 bin=GWF2_Methylomirabilis_70_14 species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3430_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(354..818)
DNA (465bp) protein (155aa)
cycL; cytochrome c-type biogenesis protein cycL Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c-type biogenesis protein cycL id=4062401 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cycL; cytochrome c-type biogenesis protein cycL
13_2_20cm_scaffold_3430_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(815..1351)
DNA (537bp) protein (179aa)
ccmG; periplasmic thioredoxin (cytochrome c biogenesis) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ccmG; periplasmic thioredoxin (cytochrome c biogenesis) id=14625138 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ccmG; periplasmic thioredoxin (cytochrome c biogenesis)
13_2_20cm_scaffold_3430_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1348..2403)
DNA (1056bp) protein (352aa)
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cycK; cytochrome c-type biogenesis protein cycK id=14625137 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cycK; cytochrome c-type biogenesis protein cycK
13_2_20cm_scaffold_3430_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2400..3200)
DNA (801bp) protein (267aa)
cycK; cytochrome c-type biogenesis protein cycK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cycK; cytochrome c-type biogenesis protein cycK id=14625137 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cycK; cytochrome c-type biogenesis protein cycK
13_2_20cm_scaffold_3430_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3197..3631)
DNA (435bp) protein (145aa)
ccmE; cytochrome c-type biogenesis protein CcmE id=14625136 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ccmE; cytochrome c-type biogenesis protein CcmE Tax=CSP1_6_Rokubacteria
ccmE; cytochrome c-type biogenesis protein CcmE
13_2_20cm_scaffold_3430_7
unknown

Not on your lists

comp(3642..3770)
DNA (129bp) protein (43aa)

This feature has no annotations

13_2_20cm_scaffold_3430_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3770..4426)
DNA (657bp) protein (219aa)
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Heme ABC transporter (Heme exporter protein C), permease protein (Cytochrome c biogenesis) id=4343481 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis)
13_2_20cm_scaffold_3430_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4423..4611)
DNA (189bp) protein (63aa)
ccmB; heme exporter protein CcmB; K02194 heme exporter protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c-type biogenesis protein CcmB id=4343483 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_3430_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5030..5749)
DNA (720bp) protein (240aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4343485 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3430_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5954..6652)
DNA (699bp) protein (233aa)
cytochrome C oxidase assembly protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A672B
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_2_20cm_scaffold_3430_12
unknown

Not on your lists

comp(6853..6957)
DNA (105bp) protein (35aa)

This feature has no annotations

13_2_20cm_scaffold_3430_13
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6961..7149)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QHY2_RALPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW90664.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii
13_2_20cm_scaffold_3430_14
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7136..7300)
DNA (165bp) protein (55aa)
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_2_20cm_scaffold_3430_15
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7313..8908)
DNA (1596bp) protein (532aa)
Peptidase S41 n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF5_RALPI
Peptidase S41 {ECO:0000313|EMBL:AGW90662.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
peptidase S41
13_2_20cm_scaffold_3430_16
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8925..10286)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QN15_RALPI rbh
Cytochrome oxidase {ECO:0000313|EMBL:EYS86810.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hypothetical protein
13_2_20cm_scaffold_3430_17
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10585..11448)
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEB0_ANADF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS27056.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
13_2_20cm_scaffold_3430_18
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(11466..11927)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG41_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
hypothetical protein
13_2_20cm_scaffold_3430_19
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(11966..13090)
DNA (1125bp) protein (375aa)
Metallophosphoesterase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG40_9BACT
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:CBE68721.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_2_20cm_scaffold_3430_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(13207..13929)
DNA (723bp) protein (241aa)
Putative lipoprotein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG39_9BACT
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CBE68720.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_2_20cm_scaffold_3430_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(13962..14783)
DNA (822bp) protein (274aa)
transmembrane transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
transmembrane transcriptional regulator id=14626590 bin=bin7_NC10_sister species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_3430_22
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14770..15339)
DNA (570bp) protein (190aa)
RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UK08_ANASK
sigma-24 FecI-like protein
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacte
13_2_20cm_scaffold_3430_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15551..16399)
DNA (849bp) protein (283aa)
peptidase M48, Ste24p; K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protease HtpX homolog id=4343487 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
peptidase M48, Ste24p
13_2_20cm_scaffold_3430_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16518..17027
DNA (510bp) protein (170aa)
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4343489 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_3430_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


17040..17222
DNA (183bp) protein (61aa)
rpmF; 50S ribosomal protein L32 RpmF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L32 id=4343491 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmF; 50S ribosomal protein L32 RpmF
13_2_20cm_scaffold_3430_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

17245..18243
DNA (999bp) protein (333aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphate acyltransferase id=2638116 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
plsX; fatty acid/phospholipid synthesis protein, methyltransferase domain
13_2_20cm_scaffold_3430_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18240..19220
DNA (981bp) protein (327aa)
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-oxoacyl-[acyl-carrier-protein] synthase 3 id=2547033 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III
13_2_20cm_scaffold_3430_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19362..19700)
DNA (339bp) protein (113aa)
baaA1; trimeric autotransporter adhesin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_2_20cm_scaffold_3430_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19881..20144
DNA (264bp) protein (88aa)
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] id=14625126 bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ACP S-malonyltransferase (EC:2.3.1.39)
13_2_20cm_scaffold_3430_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20215..21144
DNA (930bp) protein (310aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase FabG id=2547036 bin=GWC2_Methylomirabilis_70_16 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying items 1-30 of 35 in total

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