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13_2_20cm_scaffold_4038

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_4038_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..904)
DNA (903bp) protein (301aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional repressor; K00845 glucokinase [EC:2.7.1.2] id=14627250 bin=bin7_NC10_sister species=Shinella zoogloeoides genus=Shinella taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ROK family glucokinase (EC:2.7.1.2)
13_2_20cm_scaffold_4038_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(911..1654)
DNA (744bp) protein (248aa)
YdjC-like protein; K03478 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
YdjC-like protein id=3269465 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_4038_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1651..2364)
DNA (714bp) protein (238aa)
Methylase id=3269468 bin=GWA2_Methylomirabilis_73_35 species=Methanothermobacter marburgensis genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
methyltransferase-like protein
13_2_20cm_scaffold_4038_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2354..2665)
DNA (312bp) protein (104aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3269471 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4038_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2793..2912)
DNA (120bp) protein (40aa)
id=14627246 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14627246 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_4038_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2939..4666)
DNA (1728bp) protein (576aa)
ggt; gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3269474 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_4038_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4684..5181)
DNA (498bp) protein (166aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3269477 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4038_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5178..5744)
DNA (567bp) protein (189aa)
helicase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative helicase id=3914659 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
helicase
13_2_20cm_scaffold_4038_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5845..7620)
DNA (1776bp) protein (592aa)
helicase Tax=GWC2_Rokubacteria_70_16_curated
Putative helicase id=3914659 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
helicase
13_2_20cm_scaffold_4038_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7797..8333
DNA (537bp) protein (179aa)
YCII-related id=3914668 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
YciI-like protein; K09780 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_4038_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8341..9036)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI00036841CE
putative PAS/PAC sensor protein Tax=RBG_16_Acidobacteria_70_10_curated
PAS/PAC sensor signal transduction histidine kinase
13_2_20cm_scaffold_4038_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(9033..10055)
DNA (1023bp) protein (341aa)
cheB; chemotaxis Response Regulator protein CheB-glutamate methylesterase (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099, ECO:0000313|EMBL:CBE68879.1};; TaxID=671143 species="Bac
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGJ8_9BACT rbh
13_2_20cm_scaffold_4038_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(10052..10636)
DNA (585bp) protein (195aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus M
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGJ9_9BACT
MCP proteins methylation stimulator CheD
13_2_20cm_scaffold_4038_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10633..11514)
DNA (882bp) protein (294aa)
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80) Tax=GWA2_Rokubacteria_70_23_curated
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80)
Chemotaxis protein methyltransferase id=2322395 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4038_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11492..11968)
DNA (477bp) protein (159aa)
Chemotaxis signal transduction protein CheW id=4764260 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cheW; chemotaxis signal transduction protein CheW; K03408 purine-binding chemotaxis protein CheW Tax=GWA2_Rokubacteria_70_23_curated
cheW; chemotaxis signal transduction protein CheW
13_2_20cm_scaffold_4038_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11971..13716)
DNA (1746bp) protein (582aa)
Histidine kinase, HAMP region:chemotaxis sensory transducer id=2322387 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
histidine kinase, HAMP region:chemotaxis sensory transducer Tax=GWA2_Rokubacteria_73_35_curated
histidine kinase, HAMP region:chemotaxis sensory transducer
13_2_20cm_scaffold_4038_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13742..14320)
DNA (579bp) protein (193aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2322386 bin=GWA2_Methylomirabilis_73_35 species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_4038_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14317..16077)
DNA (1761bp) protein (587aa)
cheA; chemotaxis protein CheA (EC:2.7.3.-); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] Tax=GWA2_Rokubacteria_73_35_curated
Chemotaxis protein histidine kinase CheA id=4764263 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
CheW domain protein
13_2_20cm_scaffold_4038_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16074..16454)
DNA (381bp) protein (127aa)
Chemotaxis protein CheY id=2322393 bin=GWA2_Methylomirabilis_73_35 species=Gluconobacter oxydans genus=Gluconobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY Tax=GWA2_Rokubacteria_73_35_curated
two-component response regulator
13_2_20cm_scaffold_4038_20
unknown

Not on your lists

comp(16451..17113)
DNA (663bp) protein (221aa)

This feature has no annotations

13_2_20cm_scaffold_4038_21
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

comp(17110..17490)
DNA (381bp) protein (127aa)
chemotaxis protein CheY n=1 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B48270
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ADU66092.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (st
13_2_20cm_scaffold_4038_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(17712..18878)
DNA (1167bp) protein (389aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3960244 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_4038_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19001..20380
DNA (1380bp) protein (460aa)
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] id=14627587 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
pyridoxal-phosphate dependent TrpB-like enzyme
13_2_20cm_scaffold_4038_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20393..21391
DNA (999bp) protein (333aa)
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein id=14627586 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
quaternary amine uptake ABC transporter substrate-binding protein
13_2_20cm_scaffold_4038_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21531..22163
DNA (633bp) protein (211aa)
nitrate/sulfonate/bicarbonate ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit id=3960241 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate/sulfonate/bicarbonate ABC transporter permease
13_2_20cm_scaffold_4038_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22269..23018
DNA (750bp) protein (250aa)
ABC transporter, ATP-binding protein id=3960160 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter ATP-binding protein
13_2_20cm_scaffold_4038_27
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23538..24632
DNA (1095bp) protein (365aa)
Family 3 adenylate cyclase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ38_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETW92716.1}; Flags: Fragment;; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
adenylate/guanylate cyclase
13_2_20cm_scaffold_4038_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25029..25436
DNA (408bp) protein (136aa)
hypothetical protein id=3875406 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_4038_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

25460..25918
DNA (459bp) protein (153aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Hydrolase, carbon-nitrogen family id=3960157 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Providencia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase
Displaying 29 items

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