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13_2_20cm_scaffold_4509

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_4509_1
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

2..1510
DNA (1509bp) protein (503aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=CG_Anaero_02
dTDP-glucose 4,6-dehydratase id=3234516 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dTDP-glucose 4,6-dehydratase
13_2_20cm_scaffold_4509_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1510..2544
DNA (1035bp) protein (345aa)
PDZ/DHR/GLGF domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PDZ/DHR/GLGF domain protein id=3234512 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Trypsin-like serine protease with C-terminal PDZ domain
13_2_20cm_scaffold_4509_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2549..3895
DNA (1347bp) protein (449aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625321 bin=bin7_NC10_sister species=Smithella sp. ME-1 genus=Smithella taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_4509_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4052..4711
DNA (660bp) protein (220aa)
hypothetical protein; K09125 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical conserved protein id=4453409 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_4509_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4713..5231
DNA (519bp) protein (173aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_2_20cm_scaffold_4509_6
R_NC10_66_22, NC10, Bacteria

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5235..6407
DNA (1173bp) protein (391aa)
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
gcdH; glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7] id=14428654 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
acyl-CoA dehydrogenase
13_2_20cm_scaffold_4509_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6404..7219
DNA (816bp) protein (272aa)
putative CheY-like response regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=4549114 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver
13_2_20cm_scaffold_4509_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7254..7655)
DNA (402bp) protein (134aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative glyoxalase; K07104 id=14625328 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_4509_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7685..7942
DNA (258bp) protein (86aa)
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fosmidomycin resistance protein id=4767879 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_4509_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7942..8832
DNA (891bp) protein (297aa)
major facilitator transporter; K08223 MFS transporter, FSR family, fosmidomycin resistance protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fosmidomycin resistance protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein id=14625329 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator transporter
13_2_20cm_scaffold_4509_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8956..9795
DNA (840bp) protein (280aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] Tax=GWA2_Rokubacteria_73_35_curated
tRNA (Adenine-N(1)-)-methyltransferase id=4549106 bin=GWA2_Methylomirabilis_73_35 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (adenine-N(1)-)-methyltransferase
13_2_20cm_scaffold_4509_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9802..11697
DNA (1896bp) protein (632aa)
peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidylprolyl cis-trans isomerase, putative id=4433399 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_4509_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11722..12201
DNA (480bp) protein (160aa)
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcription elongation factor GreA id=3635558 bin=GWC2_Methylomirabilis_70_16 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Transcription elongation factor greA
13_2_20cm_scaffold_4509_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12216..13103
DNA (888bp) protein (296aa)
Putative uncharacterized protein id=4748154 bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
abhydrolase 1 Tax=GWA2_Rokubacteria_70_23_curated
alpha/beta hydrolase fold protein
13_2_20cm_scaffold_4509_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13103..14191
DNA (1089bp) protein (363aa)
family III CoA-transferase (EC:2.8.3.-)
formyl-CoA transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl-CoA synthase id=4424332 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4509_16
unknown

Not on your lists

comp(14188..14484)
DNA (297bp) protein (99aa)

This feature has no annotations

Displaying 16 items

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