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13_2_20cm_scaffold_569

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_569_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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2..343
DNA (342bp) protein (114aa)
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor id=14627038 bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RpoD family RNA polymerase sigma factor
13_2_20cm_scaffold_569_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

619..1752
DNA (1134bp) protein (378aa)
hypothetical protein id=14627037 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
ribonuclease H
13_2_20cm_scaffold_569_3
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1764..2708
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Paenibacillus ginsengihumi RepID=UPI0003669DC0
ECF subfamily RNA polymerase sigma-24 factor
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:AJY76664.1}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus b
13_2_20cm_scaffold_569_4
unknown

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3488..3616
DNA (129bp) protein (43aa)

This feature has no annotations

13_2_20cm_scaffold_569_5
RHI_OD1_Uhrbacteria_60_25, Uhrbacteria, Parcubacteria, Bacteria

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3613..3867
DNA (255bp) protein (85aa)
GIY-YIG catalytic domain protein n=1 Tax=Anaerococcus prevotii ACS-065-V-Col13 RepID=F0GVN7_9FIRM
putative nuclease; K07461 putative endonuclease Tax=RIFCSPHIGHO2_12_FULL_OD1_Uhrbacteria_60_25_curated
excinuclease ABC C subunit domain-containing protein
13_2_20cm_scaffold_569_6
unknown

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3896..4384
DNA (489bp) protein (163aa)

This feature has no annotations

13_2_20cm_scaffold_569_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4457..4876
DNA (420bp) protein (140aa)
id=14626280 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626280 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_569_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5022..6206)
DNA (1185bp) protein (395aa)
Bll6906 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89EZ5_BRADU
L-carnitine dehydratase/bile acid-inducible protein F Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
isomerase
13_2_20cm_scaffold_569_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6579..6893)
DNA (315bp) protein (105aa)
Import inner membrane translocase, subunit Tim44 id=4379998 bin=GWA2_Methylomirabilis_73_35 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
import inner membrane translocase subunit Tim44 Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_569_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6899..7423)
DNA (525bp) protein (175aa)
Import inner membrane translocase, subunit Tim44 id=4379998 bin=GWA2_Methylomirabilis_73_35 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
import inner membrane translocase subunit Tim44 Tax=GWA2_Rokubacteria_73_35_curated
transporter
13_2_20cm_scaffold_569_11
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

7578..8876
DNA (1299bp) protein (433aa)
Extracellular solute-binding protein family 1 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ82_STAND
family 1 extracellular solute-binding protein Tax=RBG_16_NC10_65_8_curated
family 1 extracellular solute-binding protein
13_2_20cm_scaffold_569_12
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

8942..9796
DNA (855bp) protein (285aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ81_STAND
binding-protein-dependent transporters inner membrane component; K02025 multiple sugar transport system permease protein Tax=RBG_16_NC10_65_8_curated
binding-protein-dependent transporters inner membrane component
13_2_20cm_scaffold_569_13
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

9793..10617
DNA (825bp) protein (275aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ80_STAND
binding-protein-dependent transporters inner membrane component Tax=RBG_16_NC10_65_8_curated
binding-protein-dependent transporters inner membrane component
13_2_20cm_scaffold_569_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10804..11235
DNA (432bp) protein (144aa)
UspA domain-containing protein id=14625462 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
UspA domain-containing protein Tax=CSP1_6_Rokubacteria
UspA domain-containing protein
13_2_20cm_scaffold_569_15
Methylocapsa acidiphila, Methylocapsa, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11251..12432)
DNA (1182bp) protein (394aa)
Fad-dependent monooxygenase n=1 Tax=Methylocapsa acidiphila RepID=Q2VNM1_METAI
Fad-dependent monooxygenase {ECO:0000313|EMBL:CAJ01611.1}; TaxID=133552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocapsa.;" source="Methylocapsa acid
hypothetical protein
13_2_20cm_scaffold_569_16
unknown

Not on your lists

12559..12885
DNA (327bp) protein (109aa)

This feature has no annotations

13_2_20cm_scaffold_569_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13038..14696)
DNA (1659bp) protein (553aa)
Hemin-binding lipoprotein id=3677748 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dipeptide ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
dipeptide ABC transporter substrate-binding protein
13_2_20cm_scaffold_569_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14827..15258)
DNA (432bp) protein (144aa)
UspA domain-containing protein id=3995090 bin=GWA2_Methylomirabilis_73_35 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UspA domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_569_19
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15493..17085
DNA (1593bp) protein (531aa)
acetolactate synthase large subunit (EC:2.2.1.6) Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WG09_9CYAN
thiamine pyrophosphate-dependent protein
13_2_20cm_scaffold_569_20
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

17092..18534
DNA (1443bp) protein (481aa)
amidase (EC:3.5.1.4)
Amidase {ECO:0000313|EMBL:AEB11001.1}; EC=3.5.1.4 {ECO:0000313|EMBL:AEB11001.1};; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marin
Amidase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NNI6_MARHT rbh
13_2_20cm_scaffold_569_21
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

18596..19306
DNA (711bp) protein (237aa)
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C (EC:1.3.3.11)
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C {ECO:0000313|EMBL:CCW35737.1}; EC=1.3.3.11 {ECO:0000313|EMBL:CCW35737.1};; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonad
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZE9_9BACT
13_2_20cm_scaffold_569_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19330..19920)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCQ8_NITMU
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_2_20cm_scaffold_569_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20064..20444
DNA (381bp) protein (127aa)
id=4485920 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=3068362 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_569_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20399..20812
DNA (414bp) protein (138aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=GWA2_Rokubacteria_73_35_curated
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pseudouridine synthase
Displaying 24 items

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