ggKbase home page

13_2_20cm_scaffold_6950

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_6950_1

Not on your lists

comp(71..364)
DNA (294bp) protein (98aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BFC8_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP47486.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_2_20cm_scaffold_6950_2
unknown

Not on your lists

comp(370..594)
DNA (225bp) protein (75aa)

This feature has no annotations

13_2_20cm_scaffold_6950_3
CSP1_5_NC10, NC10, Bacteria

Not on your lists

907..1539
DNA (633bp) protein (211aa)
two component LuxR family transcriptional regulator id=14430684 bin=bin3_NC10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
two component LuxR family transcriptional regulator Tax=CSP1_5_NC10
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
13_2_20cm_scaffold_6950_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1827..2081)
DNA (255bp) protein (85aa)
Transposase, putative Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transposase, putative id=3960120 bin=GWA2_Methylomirabilis_73_35 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_6950_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2245..2619)
DNA (375bp) protein (125aa)
Fis family two component sigma-54 specific transcriptional regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver protein id=14626491 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
regulatory protein LuxO
13_2_20cm_scaffold_6950_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2616..4238)
DNA (1623bp) protein (541aa)
alpha-isopropylmalate/homocitrate synthase family transferase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
2-isopropylmalate synthase/homocitrate synthase family protein id=3960116 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cimA; alpha-isopropylmalate/homocitrate synthase family transferase
13_2_20cm_scaffold_6950_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4307..4801)
DNA (495bp) protein (165aa)
CaiB/BaiF family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-carnitine dehydratase/bile acid-inducible protein F id=3960114 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
L-carnitine dehydratase/bile acid-inducible protein F
13_2_20cm_scaffold_6950_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5440..5871)
DNA (432bp) protein (144aa)
id=14626487 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=14626487 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_6950_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5868..6992)
DNA (1125bp) protein (375aa)
Acetyl-CoA acetyltransferase-like protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=GWA2_Rokubacteria_73_35_curated
Acetyl-CoA acetyltransferase-like protein id=3960112 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Acetyl-CoA acetyltransferase-like protein
13_2_20cm_scaffold_6950_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7108..7416)
DNA (309bp) protein (103aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
Sigma-54 dependent transcriptional regulator, Fis family id=3992856 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_6950_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7466..7732)
DNA (267bp) protein (89aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
7Fe ferredoxin id=14626484 bin=bin7_NC10_sister species=Microlunatus phosphovorus genus=Microlunatus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
fdxA; ferredoxin
13_2_20cm_scaffold_6950_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(7935..8831)
DNA (897bp) protein (299aa)
uncharacterized LOC100637730 id=14626483 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
uncharacterized LOC100637730 Tax=CSP1_6_Rokubacteria
glutathione transport system permease GsiD
13_2_20cm_scaffold_6950_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8831..9730)
DNA (900bp) protein (300aa)
Putative peptide ABC transporter permease protein id=4119975 bin=GWF2_Methylomirabilis_70_14 species=uncultured marine bacterium MedDCM-OCT-S11-C95 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gsiC; glutathione transport system permease GsiC; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
gsiC; glutathione transport system permease GsiC
Displaying 13 items

View Taxonomy