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13_2_20cm_scaffold_1514

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1514_1
unknown

Not on your lists

comp(3..110)
DNA (108bp) protein (36aa)

This feature has no annotations

13_2_20cm_scaffold_1514_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(407..1687)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036F7A29
Putative efflux system protein {ECO:0000313|EMBL:GAD49705.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
acrB/AcrD/AcrF family protein
13_2_20cm_scaffold_1514_3
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2129..2452
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=RBG_16_Gallionellales_57_15_curated
13_2_20cm_scaffold_1514_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3494..4471)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003793269
Uncharacterized protein {ECO:0000313|EMBL:GAD49706.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
13_2_20cm_scaffold_1514_5
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4468..5847)
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003707C55
Heavy metal RND efflux outer membrane protein of CzcC family {ECO:0000313|EMBL:GAM98963.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.
outer membrane protein
13_2_20cm_scaffold_1514_6
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5850..6710)
DNA (861bp) protein (287aa)
S-formylglutathione hydrolase (EC:3.1.2.12)
S-formylglutathione hydrolase {ECO:0000313|EMBL:AIY41357.1}; EC=3.1.2.12 {ECO:0000313|EMBL:AIY41357.1};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacte
S-formylglutathione hydrolase n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W2X9_9BURK
13_2_20cm_scaffold_1514_7
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7238..8578
DNA (1341bp) protein (447aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" sourc
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003642DE6
histidine kinase
13_2_20cm_scaffold_1514_8
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8575..9210
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B3A55
Response regulator uvrY {ECO:0000313|EMBL:EGK72275.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatili
gacA; LuxR family two component transcriptional regulator
13_2_20cm_scaffold_1514_9
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9356..10537
DNA (1182bp) protein (394aa)
stearoyl-CoA 9-desaturase (EC:1.14.19.1)
Stearoyl-CoA 9-desaturase n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037C7AEE rbh
Putative fatty acid desaturase {ECO:0000313|EMBL:EDM82202.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter
13_2_20cm_scaffold_1514_10
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10644..11366
DNA (723bp) protein (241aa)
Probable transcriptional regulatory protein A176_06358 n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SM66_9DELT rbh
Probable transcriptional regulatory protein A176_06358 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococc
hypothetical protein
13_2_20cm_scaffold_1514_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11399..11905
DNA (507bp) protein (169aa)
rimI; ribosomal-protein-alanine N-acetyltransferase (EC:2.3.1.128) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00038201C2
glycoprotease family metalloendopeptidase
13_2_20cm_scaffold_1514_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(11922..12332)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRP8_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40452.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
13_2_20cm_scaffold_1514_13
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12355..12885)
DNA (531bp) protein (177aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H1A3_METFK
13_2_20cm_scaffold_1514_14
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12900..14135)
DNA (1236bp) protein (412aa)
pyrroloquinoline quinone biosynthesis protein PqqE n=1 Tax=Azoarcus toluclasticus RepID=UPI0003655086 rbh
Coenzyme PQQ synthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; TaxID=1123367 species="Bacteria; Proteobacteria;
pqqE; pyrroloquinoline quinone biosynthesis protein PqqE
13_2_20cm_scaffold_1514_15
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14132..14410)
DNA (279bp) protein (93aa)
Coenzyme PQQ synthesis D n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47FD3_DECAR
coenzyme PQQ synthesis D; K06138 pyrroloquinoline quinone biosynthesis protein D Tax=RBG_16_Gamma2_60_9_curated
coenzyme PQQ synthesis D
13_2_20cm_scaffold_1514_16
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14415..15104)
DNA (690bp) protein (230aa)
pyrroloquinoline quinone biosynthesis protein PqqC (EC:1.3.3.11); K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11] Tax=RBG_16_Gamma2_60_9_curated
pyrroloquinoline quinone biosynthesis protein PqqC (EC:1.3.3.11)
Pyrroloquinoline-quinone synthase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CPT5_VARPS rbh
13_2_20cm_scaffold_1514_17
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15101..16009)
DNA (909bp) protein (303aa)
Coenzyme PQQ synthesis protein B n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HWK1_RUBGI rbh
pqqB; pyrroloquinoline quinone biosynthesis protein B Tax=RBG_16_Gamma2_60_9_curated
pqqB; coenzyme PQQ biosynthesis protein B PqqB
13_2_20cm_scaffold_1514_18
unknown

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comp(16096..16350)
DNA (255bp) protein (85aa)

This feature has no annotations

13_2_20cm_scaffold_1514_19
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16485..17090)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S688_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJK17742.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;
hypothetical protein
13_2_20cm_scaffold_1514_20

Not on your lists

comp(17122..17937)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0ZE60_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD42512.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
13_2_20cm_scaffold_1514_21
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18109..18426
DNA (318bp) protein (106aa)
ATP-dependent DNA helicase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UT75_PSEUP
ATP-dependent DNA helicase
ATP-dependent DNA helicase {ECO:0000313|EMBL:AER56140.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxa
Displaying 21 items

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