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13_2_20cm_scaffold_2122

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2122_1
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..237
DNA (237bp) protein (79aa)
Zinc ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM41049.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacteri
periplasmic solute-binding protein
zinc/manganese transport system substrate-binding protein; K02077 zinc/manganese transport system substrate-binding protein id=12498700 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
13_2_20cm_scaffold_2122_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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234..1007
DNA (774bp) protein (258aa)
ABC-3 protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AEG4_9PROT
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ABC-3 protein
13_2_20cm_scaffold_2122_3

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comp(965..1519)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T1AXE6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD45359.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
13_2_20cm_scaffold_2122_4

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comp(1550..2098)
DNA (549bp) protein (183aa)
Rare lipoprotein B n=1 Tax=mine drainage metagenome RepID=T1ATL7_9ZZZZ
Rare lipoprotein B {ECO:0000313|EMBL:EQD45360.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Rare lipoprotein B
13_2_20cm_scaffold_2122_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2098..2883)
DNA (786bp) protein (262aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_16_Gamma2_65_34_curated
Leucine--tRNA ligase n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=SYL_HALHL
Suspect SCG annotation. See neighboring gene [13_2_20cm_scaffold_2122_6].
leuS; leucyl-tRNA synthetase
13_2_20cm_scaffold_2122_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2876..4648)
DNA (1773bp) protein (591aa)
leucyl-tRNA synthetase (EC:6.1.1.4 6.1.1.9)
Leucine--tRNA ligase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GGZ9_NITSI
lsuS; leucyl-tRNA synthetase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
13_2_20cm_scaffold_2122_7
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4678..6114)
DNA (1437bp) protein (479aa)
Putative serine protease, MucD n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q607Z8_METCA rbh
serine protease MucD
Putative serine protease, MucD {ECO:0000313|EMBL:AAU92409.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methyloco
13_2_20cm_scaffold_2122_8
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6207..7787)
DNA (1581bp) protein (527aa)
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-] Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Apolipoprotein N-acyltransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CGH2_9GAMM
acyltransferase
13_2_20cm_scaffold_2122_9
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7792..8664)
DNA (873bp) protein (291aa)
magnesium transporter n=1 Tax=Nevskia ramosa RepID=UPI0003B548FA
CBS domain-containing protein
CBS domain containing protein {ECO:0000313|EMBL:ADC63591.1}; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium
13_2_20cm_scaffold_2122_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8670..9182)
DNA (513bp) protein (171aa)
Endoribonuclease YbeY n=1 Tax=Shewanella oneidensis (strain MR-1) RepID=YBEY_SHEON
hypothetical protein; K07042 probable rRNA maturation factor Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ybeY; rRNA maturation factor YbeY
13_2_20cm_scaffold_2122_11
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9179..10150)
DNA (972bp) protein (324aa)
PhoH family protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GV25_THISH rbh
PhoH family protein
PhoH family protein {ECO:0000313|EMBL:ACL73371.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibr
13_2_20cm_scaffold_2122_12
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10151..11524)
DNA (1374bp) protein (458aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GV26_THISH rbh
(dimethylallyl)adenosine tRNA methylthiotransferase
13_2_20cm_scaffold_2122_13
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11730..12605
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WBX9_BURSC
Uncharacterized protein {ECO:0000313|EMBL:KGM54578.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arsenici
hypothetical protein
13_2_20cm_scaffold_2122_14
unknown

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12629..13363
DNA (735bp) protein (245aa)

This feature has no annotations

13_2_20cm_scaffold_2122_15
unknown

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13350..13745
DNA (396bp) protein (132aa)

This feature has no annotations

13_2_20cm_scaffold_2122_16
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13783..14133)
DNA (351bp) protein (117aa)
Single-stranded DNA-binding protein n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=A1WZ36_HALHL
ssDNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=349124 species="Bacteria; Proteobacteria; Gamm
Displaying 16 items

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