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13_2_20cm_scaffold_171

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_171_1
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

3..98
DNA (96bp) protein (32aa)
translation elongation factor 1A (EF-1A/EF-Tu); K02358 elongation factor Tu Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_2_20cm_scaffold_171_2
unknown

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163..570
DNA (408bp) protein (136aa)

This feature has no annotations

13_2_20cm_scaffold_171_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


580..729
DNA (150bp) protein (50aa)
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 id=17522682 bin=RBG_16_Aminicenantes_63_14 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
50S ribosomal protein L33
13_2_20cm_scaffold_171_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

931..1215
DNA (285bp) protein (95aa)
Protein translocase subunit SecE n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHG8_KORVE
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
protein translocation complex subunit SecE
13_2_20cm_scaffold_171_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

1232..1765
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHG9_KORVE
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
transcription antitermination protein nusG
13_2_20cm_scaffold_171_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


1802..2233
DNA (432bp) protein (144aa)
rplK; 50S ribosomal protein L11 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=12555599 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplK; 50S ribosomal protein L11
13_2_20cm_scaffold_171_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


2271..2978
DNA (708bp) protein (236aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=12555598 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplA; 50S ribosomal protein L1
13_2_20cm_scaffold_171_8
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


2978..3568
DNA (591bp) protein (197aa)
50S ribosomal protein L10 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VA9_SOLUE
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rplJ; 50S ribosomal protein L10
13_2_20cm_scaffold_171_9
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

3609..3992
DNA (384bp) protein (128aa)
50S ribosomal protein L7 n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037693CE
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
rplL; 50S ribosomal protein L7/L12
13_2_20cm_scaffold_171_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4232..8665
DNA (4434bp) protein (1478aa)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RPOB_KORVE rbh
rpoB; DNA-directed RNA polymerase subunit beta
13_2_20cm_scaffold_171_11
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

8823..13025
DNA (4203bp) protein (1401aa)
DNA-directed RNA polymerase, subunit beta-prime; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
DNA-directed RNA polymerase subunit beta' n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RPOC_KORVE rbh
DNA-directed RNA polymerase subunit beta-prime
13_2_20cm_scaffold_171_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

13302..16034
DNA (2733bp) protein (911aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacte
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQS3_KORVE
signal transduction histidine kinase, nitrogen specific, NtrB
13_2_20cm_scaffold_171_13
Pseudogymnoascus pannorum, Pseudogymnoascus, Leotiomycetes, Ascomycota, Fungi

Not on your lists

comp(16493..18670)
DNA (2178bp) protein (726aa)
Ankyrin repeat domain protein, putative n=1 Tax=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) RepID=B6QCF1_PENMQ
Uncharacterized protein {ECO:0000313|EMBL:KFZ09481.1}; TaxID=1420914 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Pseudeurotiaceae; Pseu
hypothetical protein
13_2_20cm_scaffold_171_14
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18976..20106)
DNA (1131bp) protein (377aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKE1_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_2_20cm_scaffold_171_15
unknown

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comp(20390..20608)
DNA (219bp) protein (73aa)

This feature has no annotations

13_2_20cm_scaffold_171_16
unknown

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comp(20844..21143)
DNA (300bp) protein (100aa)

This feature has no annotations

13_2_20cm_scaffold_171_17
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(21292..22161)
DNA (870bp) protein (290aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curat
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3C4_9BACT
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
13_2_20cm_scaffold_171_18
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(22161..22682)
DNA (522bp) protein (174aa)
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curat
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=GATA_KORVE
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A
13_2_20cm_scaffold_171_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(22762..23064)
DNA (303bp) protein (101aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_01_FULL_Acidobac
aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=GATC_SYNAS
13_2_20cm_scaffold_171_20
unknown

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comp(23385..24257)
DNA (873bp) protein (291aa)

This feature has no annotations

13_2_20cm_scaffold_171_21
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

24305..24997
DNA (693bp) protein (231aa)
Transcriptional regulator, TetR family n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0CBP7_ACAM1
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABW29165.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina
13_2_20cm_scaffold_171_22
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(25000..26277)
DNA (1278bp) protein (426aa)
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
gcpE; 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] id=12554811 bin=CNBR_ACIDO species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
13_2_20cm_scaffold_171_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(26494..27075)
DNA (582bp) protein (194aa)
Metal dependent phosphohydrolase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRT6_KORVE
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
metal dependent phosphohydrolase
13_2_20cm_scaffold_171_24
unknown

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27569..27847
DNA (279bp) protein (93aa)

This feature has no annotations

Displaying 24 items

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