ggKbase home page

13_2_20cm_scaffold_1086

Search features with annotation key words

Displaying items 1-30 of 38 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1086_1
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(234..1307)
DNA (1074bp) protein (358aa)
Mox cytochrome c like protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SVW6_9BRAD
Mox cytochrome c like protein {ECO:0000313|EMBL:CCD98343.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobi
Mox/cytochrome c like protein
13_2_20cm_scaffold_1086_2
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1364..3058)
DNA (1695bp) protein (565aa)
Quinoprotein ethanol dehydrogenase {ECO:0000313|EMBL:CCD97230.1}; EC=1.1.99.- {ECO:0000313|EMBL:CCD97230.1};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhi
quinoprotein ethanol dehydrogenase (EC:1.1.99.-)
Quinoprotein ethanol dehydrogenase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SSQ3_9BRAD
13_2_20cm_scaffold_1086_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3269..3910
DNA (642bp) protein (214aa)
Isochorismatase hydrolase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TN62_MESCW
Isochorismatase hydrolase {ECO:0000313|EMBL:CDX54719.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plu
isochorismatase hydrolase
13_2_20cm_scaffold_1086_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3924..5120
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030EEEE0 rbh
Putative aliphatic amidase expression-regulating protein {ECO:0000313|EMBL:CDX54735.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobi
aliphatic amidase expression-regulating protein
13_2_20cm_scaffold_1086_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5140..5889
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D40CA2
Putative high-affinity branched-chain amino acid transport ATP-binding protein {ECO:0000313|EMBL:CDX43816.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobac
high-affinity branched-chain amino acid transport ATP-binding protein
13_2_20cm_scaffold_1086_6
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5886..6419
DNA (534bp) protein (178aa)
Putative high-affinity branched-chain amino acid transport ATP-binding protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZLN1_ROSLO
high-affinity branched-chain amino acid transport ATP-binding protein
Putative high-affinity branched-chain amino acid transport ATP-binding protein {ECO:0000313|EMBL:AEI94082.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhod
13_2_20cm_scaffold_1086_7
unknown

Not on your lists

6377..6523
DNA (147bp) protein (49aa)

This feature has no annotations

13_2_20cm_scaffold_1086_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6688..7326
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000303F159
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:CDX54729.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyll
high-affinity branched-chain amino acid transport system permease
13_2_20cm_scaffold_1086_9
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7328..7960
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F7AA9A
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:CDX43807.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyll
high-affinity branched-chain amino acid transport system permease
13_2_20cm_scaffold_1086_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7933..8289
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F7AA9A
Putative high-affinity branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:CDX43807.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyll
high-affinity branched-chain amino acid transport system permease
13_2_20cm_scaffold_1086_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8332..9177
DNA (846bp) protein (282aa)
putative dioxygenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=1773285 bin=GWD2_Deltaproteobacteria_55_8 species=Pyrobaculum oguniense genus=Pyrobaculum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_2_20cm_scaffold_1086_12
unknown

Not on your lists

9174..9410
DNA (237bp) protein (79aa)

This feature has no annotations

13_2_20cm_scaffold_1086_13
unknown

Not on your lists

9489..9689
DNA (201bp) protein (67aa)

This feature has no annotations

13_2_20cm_scaffold_1086_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9717..13343)
DNA (3627bp) protein (1209aa)
ABC transporter CydDC cysteine exporter family permease/ATP-binding protein CydC 1 n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPZ1_9PROT
ABC transporter {ECO:0000313|EMBL:KGM33751.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.
cydC1; ABC transporter CydDC cysteine exporter family permease/ATP-binding protein CydC 1
13_2_20cm_scaffold_1086_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13644..14387)
DNA (744bp) protein (248aa)
fatty acid desaturase Tax=GWA2_Rokubacteria_70_23_curated
Putative fatty acid desaturase id=4918777 bin=GWC2_Methylomirabilis_70_24 species=uncultured marine microorganism HF4000_APKG10H12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
fatty acid desaturase domain-containing protein
13_2_20cm_scaffold_1086_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14407..14658)
DNA (252bp) protein (84aa)
id=3938572 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3938572 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1086_17
unknown

Not on your lists

14859..15044
DNA (186bp) protein (62aa)

This feature has no annotations

13_2_20cm_scaffold_1086_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15207..15725)
DNA (519bp) protein (173aa)
id=3639818 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
id=3639818 Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_1086_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15833..16129)
DNA (297bp) protein (99aa)
RNP-1 like RNA-binding protein id=3938573 bin=GWC2_Methylomirabilis_70_16 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNP-1 like RNA-binding protein Tax=GWC2_Rokubacteria_70_16_curated
RNP-1 like RNA-binding protein
13_2_20cm_scaffold_1086_20
unknown

Not on your lists

comp(16270..16521)
DNA (252bp) protein (84aa)

This feature has no annotations

13_2_20cm_scaffold_1086_21
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(16575..16841)
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Methylophilus methylotrophus RepID=UPI000371F066
transglycosylase-associated protein Tax=RBG_16_Euryarchaeota_41_19_curated
transglycosylase
13_2_20cm_scaffold_1086_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16980..17237
DNA (258bp) protein (86aa)
id=3938572 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3938572 Tax=GWC2_Rokubacteria_70_16_curated
13_2_20cm_scaffold_1086_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17331..17813
DNA (483bp) protein (161aa)
id=3639818 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
id=3639818 Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_1086_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17963..18163)
DNA (201bp) protein (67aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Cold-shock DNA-binding domain protein id=2197703 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cold-shock DNA-binding domain-containing protein
13_2_20cm_scaffold_1086_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18436..18687)
DNA (252bp) protein (84aa)
id=3938572 Tax=GWA2_Rokubacteria_70_23_curated
id=3938572 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1086_26
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18830..19183
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F8J6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE11190.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
13_2_20cm_scaffold_1086_27
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

19843..20418
DNA (576bp) protein (192aa)
Transglutaminase n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RNF1_9ACTO
hypothetical protein
Tax=BJP_IG2157_Anaerolineales_55_23
13_2_20cm_scaffold_1086_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20422..21351
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002D8C523 rbh
aldo/keto reductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aldo/keto reductase
13_2_20cm_scaffold_1086_29
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21364..22236)
DNA (873bp) protein (291aa)
Pirin domain protein id=4913861 bin=GWC2_Deltaproteobacteria_66_88 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
pirin; K06911 Tax=GWA2_Deltaproteobacteria_65_63_curated
pirin
13_2_20cm_scaffold_1086_30
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

22384..24435
DNA (2052bp) protein (684aa)
HEAT repeat-containing protein Tax=RBG_16_Armatimonadetes_67_12_curated
HEAT-like repeat-containing protein id=14430381 bin=bin3_NC10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
PBS lyase HEAT domain-containing protein repeat-containing protein
Displaying items 1-30 of 38 in total

View Taxonomy