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13_2_20cm_scaffold_1113

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1113_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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223..675
DNA (453bp) protein (151aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase id=1709621 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1113_2
unknown

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comp(484..1659)
DNA (1176bp) protein (392aa)

This feature has no annotations

13_2_20cm_scaffold_1113_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1719..2954
DNA (1236bp) protein (412aa)
propionyl-CoA carboxylase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
propionyl-CoA carboxylase subunit beta id=14627796 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
propionyl-CoA carboxylase subunit beta
13_2_20cm_scaffold_1113_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2933..3193
DNA (261bp) protein (87aa)
propionyl-CoA carboxylase (EC:6.4.1.3) Tax=GWA2_Rokubacteria_73_35_curated
methylcrotonoyl-CoA carboxylase (EC:6.4.1.4)
Uncharacterized carboxylase YngE id=1709626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1113_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3511..4140)
DNA (630bp) protein (210aa)
hypothetical protein id=14626974 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_2_20cm_scaffold_1113_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4252..4995
DNA (744bp) protein (248aa)
cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalamin synthase id=1709629 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin 5'-phosphate synthase
13_2_20cm_scaffold_1113_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4974..5588
DNA (615bp) protein (205aa)
metal dependent phosphohydrolase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Metal dependent phosphohydrolase id=1709630 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_2_20cm_scaffold_1113_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5641..7200
DNA (1560bp) protein (520aa)
ABC transporter substrate binding protein (dipeptide); K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter substrate binding protein (Dipeptide) id=4626997 bin=GWF2_Methylomirabilis_70_14 species=Agrobacterium vitis genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
extracellular solute-binding protein family 5 rbh
13_2_20cm_scaffold_1113_9
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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7213..8157
DNA (945bp) protein (315aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=4626993 bin=GWF2_Methylomirabilis_70_14 species=Brevibacillus sp. BC25 genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RBG_16_Armatimonadetes_67_12_curated
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_1113_10
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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8154..9050
DNA (897bp) protein (299aa)
Binding-protein-dependent transport systems inner membrane component id=4626990 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RBG_16_Armatimonadetes_67_12_curated
dppC2; Dipeptide ABC transporter; permease component
13_2_20cm_scaffold_1113_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9061..10677
DNA (1617bp) protein (539aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=GWA2_Rokubacteria_70_23_curated
Gamma-glutamyltransferase id=3249133 bin=GWC2_Methylomirabilis_70_24 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
gamma-glutamyltransferase
13_2_20cm_scaffold_1113_12
unknown

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comp(10694..10945)
DNA (252bp) protein (84aa)

This feature has no annotations

13_2_20cm_scaffold_1113_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(11200..11853)
DNA (654bp) protein (218aa)
id=14627273 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14627273 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_1113_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11850..12545)
DNA (696bp) protein (232aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1709660 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_1113_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12600..12944
DNA (345bp) protein (115aa)
putative Heat shock protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hslR; Hsp15 family heat shock protein; K04762 ribosome-associated heat shock protein Hsp15 id=14627276 bin=bin7_NC10_sister species=Leucobacter sp. UCD-THU genus=Leucobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
tRNA synthetase RNA-binding protein
13_2_20cm_scaffold_1113_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13002..13460
DNA (459bp) protein (153aa)
putative transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative sensor histidine kinase id=4194125 bin=GWC2_Methylomirabilis_70_24 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Crp/Fnr family transcriptional regulator
13_2_20cm_scaffold_1113_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(13572..14432)
DNA (861bp) protein (287aa)
h16_A2129; Zn-dependent hydrolase id=14625954 bin=bin7_NC10_sister species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
h16_A2129; Zn-dependent hydrolase Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_1113_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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14765..15343
DNA (579bp) protein (193aa)
Adenosylcobinamide-phosphateguanylyltransferase (EC:2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] Tax=GWA2_Rokubacteria_73_35_c
adenosylcobinamide kinase id=2285111 bin=GWA2_Methylomirabilis_73_35 species=Citromicrobium bathyomarinum genus=Citromicrobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
adenosylcobinamide-phosphate guanylyltransferase
13_2_20cm_scaffold_1113_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15324..16496
DNA (1173bp) protein (391aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] Tax=GWA2_Rokubacteria_
cobT; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] id=14627279 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
13_2_20cm_scaffold_1113_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

16493..17893
DNA (1401bp) protein (467aa)
cobB; cobyrinic acid a,c-diamide synthase; K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cobyrinic acid A,C-diamide synthase n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q6A3_9DELT rbh
cobyrinic acid a,c-diamide synthase
13_2_20cm_scaffold_1113_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17890..18765
DNA (876bp) protein (292aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic binding protein id=2285114 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type transporter, periplasmic subunit
13_2_20cm_scaffold_1113_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18762..19781
DNA (1020bp) protein (340aa)
Fe3+-siderophore ABC transporter permease; K02015 iron complex transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Vitamin B12 import system, permease protein BtuC id=4820070 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fe3+-siderophore ABC transporter permease
13_2_20cm_scaffold_1113_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19778..20593
DNA (816bp) protein (272aa)
putative Vitamin B12 import system, ATP-binding protein BtuD (EC:3.6.3.-); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=GWA2_Rokubacteria_73_35_curated
putative Vitamin B12 import system, ATP-binding protein BtuD (EC:3.6.3.-)
Iron-enterobactin transporter ATP-binding protein id=2285115 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1113_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20833..22761
DNA (1929bp) protein (643aa)
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TonB-dependent receptor id=2285117 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
TonB-dependent receptor
13_2_20cm_scaffold_1113_25
unknown

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23022..23276
DNA (255bp) protein (85aa)

This feature has no annotations

13_2_20cm_scaffold_1113_26
Thermobaculum terrenum, Thermobaculum, Bacteria

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23273..24223
DNA (951bp) protein (317aa)
Periplasmic binding protein n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CE07_THET1 rbh
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ACZ41163.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
13_2_20cm_scaffold_1113_27
unknown

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24279..24944
DNA (666bp) protein (222aa)

This feature has no annotations

13_2_20cm_scaffold_1113_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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24952..25164
DNA (213bp) protein (71aa)
Uncharacterized conserved protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized conserved protein id=2285119 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 28 items

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