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13_2_20cm_scaffold_232

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_232_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1..1227)
DNA (1227bp) protein (409aa)
putative amidase protein; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWA2_Rokubacteria_73_35_curated
PUTATIVE AMIDASE PROTEIN id=4323718 bin=GWC2_Methylomirabilis_70_16 species=Mesorhizobium loti genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative amidase protein
13_2_20cm_scaffold_232_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1224..2987)
DNA (1764bp) protein (588aa)
carbamoyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbamoyl transferase id=4759402 bin=GWC2_Methylomirabilis_70_16 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative carbamoyl transferase, NodU family
13_2_20cm_scaffold_232_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3039..3719)
DNA (681bp) protein (227aa)
Putative uncharacterized protein id=4689031 bin=GWC2_Methylomirabilis_70_24 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_2_20cm_scaffold_232_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3810..4541)
DNA (732bp) protein (244aa)
ABC transporter ATP-binding protein, putative branched-chain amino acid transport; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
ABC transporter ATP-binding protein id=14625566 bin=bin7_NC10_sister species=Bordetella parapertussis genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter ATP-binding protein, putative branched-chain amino acid transport
13_2_20cm_scaffold_232_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4542..5297)
DNA (756bp) protein (252aa)
livG3; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein id=14625567 bin=bin7_NC10_sister species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
livG3; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=CSP1_6_Rokubacteria
livG3; branched-chain amino acid ABC transporter ATP-binding protein
13_2_20cm_scaffold_232_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5299..6243)
DNA (945bp) protein (315aa)
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625568 bin=bin7_NC10_sister species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_2_20cm_scaffold_232_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6240..7115)
DNA (876bp) protein (292aa)
livH-3; branched-chain amino acid ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
livH-3; branched-chain amino acid ABC transporter permease id=14625569 bin=bin7_NC10_sister species=Natrinema versiforme genus=Natrinema taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_2_20cm_scaffold_232_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7115..9367)
DNA (2253bp) protein (751aa)
solute binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
solute binding protein
13_2_20cm_scaffold_232_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(9461..10831)
DNA (1371bp) protein (457aa)
branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
livK; branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein id=14625571 bin=bin7_NC10_sister species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
branched chain amino acid ABC transporter substrate-binding protein
13_2_20cm_scaffold_232_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

11296..11619
DNA (324bp) protein (108aa)
id=14625572 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
id=14625572 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_232_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11681..12205)
DNA (525bp) protein (175aa)
Pfpi family intracellular protease; K05520 protease I [EC:3.2.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Intracellular protease, PfpI family id=4900374 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Pfpi family intracellular protease
13_2_20cm_scaffold_232_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12246..12410)
DNA (165bp) protein (55aa)
Putative regulatory protein, FmdB family id=4900375 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_232_13
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(12441..12989)
DNA (549bp) protein (183aa)
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
NAD-dependent aldehyde dehydrogenase n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M8P1_9CYAN
succinate-semialdehyde dehydrogenase
13_2_20cm_scaffold_232_14
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13058..13507
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A4106
Uncharacterized protein {ECO:0000313|EMBL:KEH11577.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
13_2_20cm_scaffold_232_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(13909..15240)
DNA (1332bp) protein (444aa)
amidase id=14430439 bin=bin3_NC10 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
amidase Tax=CSP1_5_NC10
amidase
13_2_20cm_scaffold_232_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15313..17355)
DNA (2043bp) protein (681aa)
TRAP C4-dicarboxylate transport system permease DctM Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative TRAP-type C4-dicarboxylate transport system, large permease component id=4900377 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
TRAP C4-dicarboxylate transport system permease DctM
13_2_20cm_scaffold_232_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17352..18068)
DNA (717bp) protein (239aa)
putative transporter dctQ related transmembrane protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative membrane protein id=4900378 bin=GWA2_Methylomirabilis_73_35 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_232_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18116..19258)
DNA (1143bp) protein (381aa)
Putative uncharacterized protein id=4900379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
C4-dicarboxylate ABC transporter
13_2_20cm_scaffold_232_19
unknown

Not on your lists

19310..19411
DNA (102bp) protein (34aa)

This feature has no annotations

13_2_20cm_scaffold_232_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19434..20237)
DNA (804bp) protein (268aa)
protease Do (EC:3.4.21.108) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protease Do (EC:3.4.21.108) id=14625822 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
13_2_20cm_scaffold_232_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20234..20872)
DNA (639bp) protein (213aa)
lon3; ATP-dependent protease La; K07157 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lon3; ATP-dependent protease La; K07157 id=14625820 bin=bin7_NC10_sister species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ATP-dependent protease La
13_2_20cm_scaffold_232_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20878..21966)
DNA (1089bp) protein (363aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Mrp id=4334328 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Chromosome-partitioning ATPase protein
13_2_20cm_scaffold_232_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22052..22537
DNA (486bp) protein (162aa)
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
flavin reductase domain-containing protein id=14625818 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
flavin reductase domain-containing protein
13_2_20cm_scaffold_232_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

22534..23616
DNA (1083bp) protein (361aa)
lpsC; perosamine synthetase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DegT/DnrJ/EryC1/StrS aminotransferase id=4600877 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxal phosphate-dependent enzyme
13_2_20cm_scaffold_232_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

23616..24734
DNA (1119bp) protein (373aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
group 1 glycosyl transferase id=14625816 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
group 1 glycosyl transferase
13_2_20cm_scaffold_232_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24731..26476
DNA (1746bp) protein (582aa)
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lipid A export ATP-binding/permease protein MsbA id=4600885 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phospholipid-lipopolysaccharide ABC transporter
13_2_20cm_scaffold_232_27
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26503..27717)
DNA (1215bp) protein (405aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Saccharomonospora marina XMU15 RepID=H5XBV5_9PSEU
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EHR52742.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" sou
pks4-2; type-I PKS
13_2_20cm_scaffold_232_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27714..28613)
DNA (900bp) protein (300aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] id=14627959 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
lipid A biosynthesis acyltransferase
13_2_20cm_scaffold_232_29
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(28752..30479)
DNA (1728bp) protein (576aa)
NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nadE; glutamine-dependent NAD+ synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] id=14625812 bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
nadE; NAD(+) synthase (glutamine-hydrolyzing) (EC:6.3.5.1)
13_2_20cm_scaffold_232_30
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

30625..30813
DNA (189bp) protein (63aa)
id=4476363 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=4476363 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 35 in total

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