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13_2_20cm_scaffold_374

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_374_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..496)
DNA (495bp) protein (165aa)
gspE2; general secretion pathway protein E Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein E, contains GAF domain id=3564809 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gspE2; general secretion pathway protein E
13_2_20cm_scaffold_374_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(450..2168)
DNA (1719bp) protein (573aa)
gspE2; general secretion pathway protein E Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein E, contains GAF domain id=2045751 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
gspE2; general secretion pathway protein E
13_2_20cm_scaffold_374_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2274..3674)
DNA (1401bp) protein (467aa)
ferredoxin-NADP reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] Tax=GWA2_Rokubacteria_73_35_curated
Ferredoxin--NADP(+) reductase id=4040236 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ferredoxin-NADP reductase
13_2_20cm_scaffold_374_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3674..4120)
DNA (447bp) protein (149aa)
CBS domain containing protein id=4040235 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_374_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4136..5818)
DNA (1683bp) protein (561aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit id=5018848 bin=GWA2_Methylomirabilis_73_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_374_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5811..6791)
DNA (981bp) protein (327aa)
LAO/AO transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035D9A9F
LAO/AO transport system ATPase
13_2_20cm_scaffold_374_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6788..8209)
DNA (1422bp) protein (474aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=4257368 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_374_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8231..8617)
DNA (387bp) protein (129aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalamin B12-binding domain protein id=5018846 bin=GWA2_Methylomirabilis_73_35 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin B12-binding domain-containing protein
13_2_20cm_scaffold_374_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8781..9044)
DNA (264bp) protein (88aa)
two component sigma-54 specific Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=GWA2_Rokubacteria_73_35_curated
Two component, sigma54 specific, Fis family transcriptional regulator id=4040234 bin=GWA2_Methylomirabilis_73_35 species=Novosphingobium nitrogenifigens genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG)
13_2_20cm_scaffold_374_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9055..10257)
DNA (1203bp) protein (401aa)
Uncharacterized protein id=4040233 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_374_11
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10356..12017)
DNA (1662bp) protein (554aa)
Ammonium transporter n=1 Tax=Desulfovibrio sp. X2 RepID=S7TI48_9DELT
ammonium transporter; K03320 ammonium transporter, Amt family Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
ammonium transporter
13_2_20cm_scaffold_374_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12217..12819)
DNA (603bp) protein (201aa)
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4] Tax=GWA2_Rokubacteria_73_35_curated
Siroheme synthase id=4894275 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
siroheme synthase
13_2_20cm_scaffold_374_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12823..13611)
DNA (789bp) protein (263aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase id=4453410 bin=GWA2_Methylomirabilis_73_35 species=Methanosaeta thermophila genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uroporphyrin-III C-methyltransferase
13_2_20cm_scaffold_374_14
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13586..14431)
DNA (846bp) protein (282aa)
Formate/nitrite transporter family protein n=1 Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EFH6_THECK rbh
formate/nitrite transporter family protein
Formate/nitrite transporter family protein {ECO:0000313|EMBL:AGA59033.1}; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus co
13_2_20cm_scaffold_374_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14466..16340)
DNA (1875bp) protein (625aa)
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1); K00366 ferredoxin-nitrite reductase [EC:1.7.7.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1)
Ferredoxin-nitrite reductase id=4453411 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_374_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16904..17101)
DNA (198bp) protein (66aa)
hypothetical protein id=4040227 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_374_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17116..18498)
DNA (1383bp) protein (461aa)
class III aminotransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class III aminotransferase id=14626831 bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
class III aminotransferase
13_2_20cm_scaffold_374_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18515..18856)
DNA (342bp) protein (114aa)
AIG2 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AIG2 family protein id=4040225 bin=GWA2_Methylomirabilis_73_35 species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_374_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19070..19273)
DNA (204bp) protein (68aa)
dehydrogenase, selenocysteine-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dehydrogenase, selenocysteine-containing protein id=4040224 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydrogenase, selenocysteine-containing protein
13_2_20cm_scaffold_374_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19292..19720)
DNA (429bp) protein (143aa)
Glutaredoxin-like domain protein id=4040223 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutaredoxin-like domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
glutaredoxin-like domain-containing protein
13_2_20cm_scaffold_374_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19880..21346)
DNA (1467bp) protein (489aa)
acetolactate synthase (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=GWA2_Rokubacteria_73_35_curated
Acetolactate synthase id=4040222 bin=GWA2_Methylomirabilis_73_35 species=Saccharopolyspora spinosa genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
thiamine pyrophosphate-binding protein
13_2_20cm_scaffold_374_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21343..21735)
DNA (393bp) protein (131aa)
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1) Tax=GWA2_Rokubacteria_73_35_curated
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1)
Aspartate aminotransferase (Transaminase a) (Aspat) id=4040221 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_374_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21744..22466)
DNA (723bp) protein (241aa)
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1)
Aspartate aminotransferase (Transaminase a) (Aspat) id=3742203 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_374_24
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22992..24209)
DNA (1218bp) protein (406aa)
Putative uncharacterized protein n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VKX7_9CYAN rbh
Putative uncharacterized protein Tax=RBG_13_Deltaproteobacteria_65_10_curated
13_2_20cm_scaffold_374_25
Chamaesiphon minutus, Chamaesiphon, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(26222..27667)
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034963A9 rbh
membrane protein involved in the export of O-antigen and teichoic acid
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:AFY96579.1}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon
Displaying 25 items

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