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13_2_20cm_scaffold_4681

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_4681_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2..601
DNA (600bp) protein (200aa)
oppD; peptide ABC transporter ATP-binding protein (EC:3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
oppD; peptide ABC transporter ATP-binding protein (EC:3.6.3.24)
Peptide ABC transporter ATP-binding protein id=3311241 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_4681_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

610..1596
DNA (987bp) protein (329aa)
oppF; oligopeptide ABC transporter ATP-binding protein (EC:3.6.3.27); K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
oppF; peptide ABC transporter ATP-binding protein (EC:3.6.3.27)
Peptide ABC transporter ATP-binding protein id=3311237 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_4681_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1673..2314
DNA (642bp) protein (214aa)
alpha/beta fold family hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
esterase/lipase id=14627440 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase fold protein
13_2_20cm_scaffold_4681_4
unknown

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2317..2406
DNA (90bp) protein (30aa)

This feature has no annotations

13_2_20cm_scaffold_4681_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2461..3336)
DNA (876bp) protein (292aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase M23 id=14627438 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptidase M23
13_2_20cm_scaffold_4681_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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3644..4813
DNA (1170bp) protein (390aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) id=14627617 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALSr1 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
13_2_20cm_scaffold_4681_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4861..6168
DNA (1308bp) protein (436aa)
hom; homoserine dehydrogenase (EC:1.1.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
homoserine dehydrogenase (HDH): ThrA, MetL (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=14627618 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10 rbh
hom; homoserine dehydrogenase (EC:1.1.1.3)
13_2_20cm_scaffold_4681_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6165..7223
DNA (1059bp) protein (353aa)
thrC_2; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-threonine synthase (EC:4.2.3.1) id=14627619 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
thrC_2; threonine synthase (EC:4.2.3.1)
13_2_20cm_scaffold_4681_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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7460..8221
DNA (762bp) protein (254aa)
membrane protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=2513752 bin=GWC2_Methylomirabilis_70_24 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_scaffold_4681_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8410..9597
DNA (1188bp) protein (396aa)
lysC; aspartokinase (EC:2.7.2.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
lysC; aspartokinase (EC:2.7.2.4) id=14627626 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lysC; aspartokinase (EC:2.7.2.4)
13_2_20cm_scaffold_4681_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9594..10703
DNA (1110bp) protein (370aa)
alcohol dehydrogenase zinc-binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alcohol dehydrogenase zinc-binding domain protein id=4231240 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alcohol dehydrogenase zinc-binding domain-containing protein
13_2_20cm_scaffold_4681_12
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10830..11282
DNA (453bp) protein (151aa)
Putative aldehyde dehydrogenase subunit III n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GH82_9BRAD
putative aldehyde dehydrogenase subunit III
Putative aldehyde dehydrogenase subunit III {ECO:0000313|EMBL:BAL80119.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source
13_2_20cm_scaffold_4681_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11285..12454
DNA (1170bp) protein (390aa)
aldehyde dehydrogenase (EC:1.3.99.16)
Tat (Twin-arginine translocation) pathway signal sequence n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P474_9BRAD
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS33223.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
Displaying 13 items

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