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13_2_20cm_scaffold_583

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Displaying items 1-30 of 50 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_583_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2..514
DNA (513bp) protein (171aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=14626924 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase subunit L
13_2_20cm_scaffold_583_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

842..2308
DNA (1467bp) protein (489aa)
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] id=14626923 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase, chain M (EC:1.6.99.5)
13_2_20cm_scaffold_583_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2314..3741
DNA (1428bp) protein (476aa)
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] id=14626922 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase, chain N (EC:1.6.99.5)
13_2_20cm_scaffold_583_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3834..4469
DNA (636bp) protein (212aa)
TetR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TetR family transcriptional regulator id=14626921 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
TetR family transcriptional regulator
13_2_20cm_scaffold_583_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4475..5074
DNA (600bp) protein (200aa)
sigW5; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ECF subfamily RNA polymerase sigma factor id=4197918 bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ECF family RNA polymerase sigma factor
13_2_20cm_scaffold_583_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5135..5407
DNA (273bp) protein (91aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L21 id=3966269 bin=GWA2_Elusimicrobia_69_24 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
50S ribosomal protein L21
13_2_20cm_scaffold_583_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


5415..5672
DNA (258bp) protein (86aa)
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L27 id=4751269 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
50S ribosomal protein L27
13_2_20cm_scaffold_583_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5710..6729
DNA (1020bp) protein (340aa)
GTPase obg; K03979 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
GTPase obg; K03979 GTP-binding protein id=14626915 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
Obg; GTPase
13_2_20cm_scaffold_583_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6708..7832
DNA (1125bp) protein (375aa)
gamma-glutamyl kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] id=14626914 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
glutamate 5-kinase
13_2_20cm_scaffold_583_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7848..9104
DNA (1257bp) protein (419aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proA; gamma-glutamylphosphate reductase (EC:1.2.1.41) id=14626913 bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
13_2_20cm_scaffold_583_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9139..9762
DNA (624bp) protein (208aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:3.5.4.4); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase id=2992186 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_583_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9759..10115
DNA (357bp) protein (119aa)
Iojap-like protein id=4787949 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iojap family protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iojap family protein
13_2_20cm_scaffold_583_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10209..10574
DNA (366bp) protein (122aa)
transcriptional regulators, TraR/DksA family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transcriptional regulators, TraR/DksA family id=14626910 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
transcriptional regulators, TraR/DksA family
13_2_20cm_scaffold_583_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10597..11574
DNA (978bp) protein (326aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4787945 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_583_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11757..12521
DNA (765bp) protein (255aa)
amidophosphoribosyltransferase Tax=GWA2_Rokubacteria_73_35_curated
Amidophosphoribosyltransferase, putative id=4787943 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidophosphoribosyltransferase
13_2_20cm_scaffold_583_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12588..13592
DNA (1005bp) protein (335aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.-)
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) id=4787941 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_583_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13593..14780
DNA (1188bp) protein (396aa)
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=GWA2_Rokubacteria_73_35_curated
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase id=4828185 bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_583_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14777..15556
DNA (780bp) protein (260aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Triosephosphate isomerase id=4787937 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
triosephosphate isomerase
13_2_20cm_scaffold_583_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15561..15902
DNA (342bp) protein (114aa)
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Preprotein translocase, SecG subunit id=4787935 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
secG; preprotein translocase subunit SecG
13_2_20cm_scaffold_583_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

15904..17553
DNA (1650bp) protein (550aa)
ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Oligopeptide-binding protein id=2992161 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide-binding protein
13_2_20cm_scaffold_583_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17583..18578
DNA (996bp) protein (332aa)
Binding-protein-dependent transport systems inner membrane component id=4787931 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_2_20cm_scaffold_583_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18843..19373
DNA (531bp) protein (177aa)
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide ABC transporter, membrane protein id=4787929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_583_23
unknown

Not on your lists

19584..20519
DNA (936bp) protein (312aa)

This feature has no annotations

13_2_20cm_scaffold_583_24
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20600..22294
DNA (1695bp) protein (565aa)
Quino(Hemo)protein alcohol dehydrogenase, PQQ-dependent n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VUD7_9BURK
Quino(Hemo)protein alcohol dehydrogenase, PQQ-dependent {ECO:0000313|EMBL:EGF33746.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="
PQQ-dependent enzyme-like protein
13_2_20cm_scaffold_583_25
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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22368..23189
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WRX6_ALIAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ44563.1}; TaxID=1048834 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldariu
13_2_20cm_scaffold_583_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23356..24378
DNA (1023bp) protein (341aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lipA; lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase id=4828152 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_583_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24375..24725
DNA (351bp) protein (117aa)
nuoA; NADH-quinone oxidoreductase subunit A (NADH dehydrogenase I, chain A) (NDH-1, chain A) (EC:1.6.99.5 1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nuoA; NADH-quinone oxidoreductase subunit A (NADH dehydrogenase I, chain A) (NDH-1, chain A) (EC:1.6.99.5 1.6.5.3)
NADH-quinone oxidoreductase subunit A id=4828151 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_583_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24716..25174
DNA (459bp) protein (153aa)
nuoB1_[H]; NADH-ubiquinone oxidoreductase chain B (EC:1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B id=2992145 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_583_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25218..25715
DNA (498bp) protein (166aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit C id=2992141 bin=GWF2_Methylomirabilis_70_14 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_583_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25723..27096
DNA (1374bp) protein (458aa)
nuoD; NADH dehydrogenase I subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase I subunit D (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3] id=14627532 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10 rbh
NADH dehydrogenase I subunit D (EC:1.6.99.5)
Displaying items 1-30 of 50 in total

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