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13_2_20cm_scaffold_761

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_761_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3..1283
DNA (1281bp) protein (427aa)
amino acid permease-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amino acid permease-associated region id=4560584 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
amino acid permease-associated protein
13_2_20cm_scaffold_761_2
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

1532..1933
DNA (402bp) protein (134aa)
UPI0001586237 related cluster id=3431001 bin=GWA2_Methylomirabilis_73_35 species=Botryotinia fuckeliana genus=Botryotinia taxon_order=Helotiales taxon_class=Leotiomycetes phylum=Ascomycota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RBG_16_Actinobacteria_64_13_curated
13_2_20cm_scaffold_761_3
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1976..2317
DNA (342bp) protein (114aa)
hypothetical protein id=14430680 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein
13_2_20cm_scaffold_761_4
R_WOR_2_52_10, WOR-2, Bacteria

Not on your lists

2427..3014
DNA (588bp) protein (196aa)
Two-component hybrid sensor and regulator n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89EQ6_BRADU
two-component hybrid sensor and regulator Tax=RIFCSPHIGHO2_01_FULL_WOR_2_52_10_curated
two-component hybrid sensor and regulator
13_2_20cm_scaffold_761_5
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

Not on your lists

2963..3958
DNA (996bp) protein (332aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-)
Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTD7_9GAMM
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
13_2_20cm_scaffold_761_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3987..5291)
DNA (1305bp) protein (435aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative sugar uptake ABC transporter periplasmic solute-binding protein id=2228895 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_2_20cm_scaffold_761_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5418..7052
DNA (1635bp) protein (545aa)
thiamine pyrophosphate protein central region; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine pyrophosphate protein id=4148695 bin=GWC2_Syntrophobacterales_56_13 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
thiamine pyrophosphate binding domain-containing protein
13_2_20cm_scaffold_761_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7068..8264
DNA (1197bp) protein (399aa)
formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
formyl-coenzyme A transferase (EC:2.8.3.16)
Formyl-coenzyme A transferase n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=FCTA_STRAW
13_2_20cm_scaffold_761_9
unknown

Not on your lists

8323..8778
DNA (456bp) protein (152aa)

This feature has no annotations

13_2_20cm_scaffold_761_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8737..9642)
DNA (906bp) protein (302aa)
phosphogluconate dehydrogenase, NAD-binding protein Tax=GWC2_Rokubacteria_70_16_curated
Phosphogluconate dehydrogenase, NAD-binding id=3680154 bin=GWA2_Elusimicrobia_69_24 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
putative NAD(P)-binding protein
13_2_20cm_scaffold_761_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9664..10890)
DNA (1227bp) protein (409aa)
amidohydrolase; K01485 cytosine deaminase [EC:3.5.4.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amidohydrolase id=4792716 bin=GWC2_Methylomirabilis_70_16 species=Enterococcus faecalis genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative hydrolase
13_2_20cm_scaffold_761_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10981..11805
DNA (825bp) protein (275aa)
ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC-type transporter, integral membrane subunit id=3971526 bin=GWC2_Methylomirabilis_70_24 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
nitrate/sulfonate/bicarbonate ABC transporter permease
13_2_20cm_scaffold_761_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11802..12596
DNA (795bp) protein (265aa)
ABC transporter related Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter-related protein id=3348592 bin=GWF2_Methylomirabilis_70_14 species=Methanocaldococcus villosus genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter related
13_2_20cm_scaffold_761_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12593..13342
DNA (750bp) protein (250aa)
ABC transporter, membrane spanning protein (Nitrate/sulfonates) id=3971524 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ssuC; ABC transporter, membrane spanning protein (nitrate/sulfonates); K15554 sulfonate transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter permease protein (nitrate/sulfonates)
13_2_20cm_scaffold_761_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13378..14412
DNA (1035bp) protein (345aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein id=3971523 bin=GWC2_Methylomirabilis_70_24 species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_2_20cm_scaffold_761_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14426..15775
DNA (1350bp) protein (450aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=GWA2_Rokubacteria_70_23_curated
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase id=3971522 bin=GWC2_Methylomirabilis_70_24 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_761_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15856..16464)
DNA (609bp) protein (203aa)
Transposase, putative id=3960120 bin=GWA2_Methylomirabilis_73_35 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transposase, putative Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_761_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16858..17526
DNA (669bp) protein (223aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627686 bin=bin7_NC10_sister species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_761_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17737..18669
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003770DDF rbh
cyclase Tax=GWA2_Rokubacteria_73_35_curated
cyclase
13_2_20cm_scaffold_761_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18669..20960
DNA (2292bp) protein (764aa)
carbon monoxide dehydrogenase id=14628099 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
carbon monoxide dehydrogenase Tax=CSP1_6_Rokubacteria
oxidoreductase, large chain
13_2_20cm_scaffold_761_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20957..22090
DNA (1134bp) protein (378aa)
putative hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Amidohydrolase 2 protein id=2312825 bin=GWA2_Methylomirabilis_73_35 species=Ralstonia solanacearum genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative hydrolase
13_2_20cm_scaffold_761_22
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22224..22934)
DNA (711bp) protein (237aa)
Fatty acid hydroxylase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MUX1_CORCM
fatty acid hydroxylase
Fatty acid hydroxylase {ECO:0000313|EMBL:AFE07771.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Cora
13_2_20cm_scaffold_761_23
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(23084..23746)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MF05_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68334.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_2_20cm_scaffold_761_24
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(23960..25096)
DNA (1137bp) protein (379aa)
Putative uncharacterized protein id=1983139 bin=GWD2_Nitrospirae-related_57_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits rbh
hypothetical protein Tax=GWC2_Nitrospirae_57_13_curated
hypothetical protein
13_2_20cm_scaffold_761_25
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(25133..26374)
DNA (1242bp) protein (414aa)
glyA1; serine hydroxymethyltransferase (EC:2.1.2.1)
2-amino-3-ketobutyrate CoA ligase {ECO:0000313|EMBL:KDA53810.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquati
Serine hydroxymethyltransferase id=4127497 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae rbh
13_2_20cm_scaffold_761_26
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(26425..27414)
DNA (990bp) protein (330aa)
NAD-dependent epimerase/dehydratase Tax=RBG_13_Acidobacteria_68_16_curated
Putative nucleoside-diphosphate sugar epimerase id=4361408 bin=GWA2_Ignavibacteria_55_11 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
NAD-dependent epimerase/dehydratase
13_2_20cm_scaffold_761_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(27532..28431)
DNA (900bp) protein (300aa)
Dehydrogenase (Modular protein) id=3428787 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces cattleya genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Dehydrogenase Tax=GWC2_Rokubacteria_70_16_curated
oxidoreductase
13_2_20cm_scaffold_761_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28448..29278)
DNA (831bp) protein (277aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=GWA2_Rokubacteria_73_35_curated
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
RNA pseudouridylate synthase
13_2_20cm_scaffold_761_29
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(29294..29959)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKT2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67731.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_2_20cm_scaffold_761_30
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(29962..31563)
DNA (1602bp) protein (534aa)
General secretion pathway protein A n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKT1_9BACT
exeA; General secretion pathway protein A
General secretion pathway protein A {ECO:0000313|EMBL:CBE67730.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;
Displaying items 1-30 of 34 in total

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