ggKbase home page

13_2_20cm_scaffold_178

Search features with annotation key words

Displaying 28 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_178_1
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

1..447
DNA (447bp) protein (149aa)
Sugar transport family protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NSM4_GRAMM
sugar transport family protein
Sugar transport family protein {ECO:0000313|EMBL:AEU35123.1}; Flags: Precursor;; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicell
13_2_20cm_scaffold_178_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(564..2141)
DNA (1578bp) protein (526aa)
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM05_KORVE rbh
EmrB/QacA family drug resistance transporter
Drug resistance transporter EmrB/QacA subfamily {ECO:0000313|EMBL:ABF42095.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Kori
13_2_20cm_scaffold_178_3
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2143..2775)
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJP7_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein
13_2_20cm_scaffold_178_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(2772..3968)
DNA (1197bp) protein (399aa)
Secretion protein HlyD n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM04_KORVE rbh
secretion protein HlyD
Secretion protein HlyD {ECO:0000313|EMBL:ABF42096.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain
13_2_20cm_scaffold_178_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(3968..5458)
DNA (1491bp) protein (497aa)
Outer membrane efflux protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM03_KORVE
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ABF42097.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Kor
13_2_20cm_scaffold_178_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(5739..6629)
DNA (891bp) protein (297aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9VWX4_9CYAN
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:CDM65852.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyr
13_2_20cm_scaffold_178_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6900..7154
DNA (255bp) protein (85aa)
Transglycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW56_9GAMM
Transglycosylase {ECO:0000313|EMBL:EIL91447.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiph
hypothetical protein
13_2_20cm_scaffold_178_8
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

7247..8638
DNA (1392bp) protein (464aa)
Ethanolamine ammonia-lyase, large subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJD5_SINAD rbh
ethanolamine ammonia-lyase large subunit
Ethanolamine ammonia-lyase, large subunit {ECO:0000313|EMBL:AGA29362.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="
13_2_20cm_scaffold_178_9
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8639..9412
DNA (774bp) protein (258aa)
Ethanolamine ammonia-lyase light chain {ECO:0000256|SAAS:SAAS00064961}; EC=4.3.1.7 {ECO:0000256|SAAS:SAAS00064958};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; P
Ethanolamine ammonia-lyase, small subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKK4_SINAD
ethanolamine ammonia-lyase small subunit
13_2_20cm_scaffold_178_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

9716..11575
DNA (1860bp) protein (620aa)
Phospholipase C {ECO:0000313|EMBL:ABF43181.1}; EC=3.1.4.3 {ECO:0000313|EMBL:ABF43181.1};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candida
Phospholipase C n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIW9_KORVE rbh
phospholipase C
13_2_20cm_scaffold_178_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11756..12514
DNA (759bp) protein (253aa)
protein phosphatase 2C-like protein; K01090 protein phosphatase [EC:3.1.3.16] id=24508631 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
protein phosphatase 2C-like protein; K01090 protein phosphatase [EC:3.1.3.16] Tax=RBG_16_RIF_WS3X_71_46_curated
putative phosphoprotein phosphatase (EC:3.1.3.16)
13_2_20cm_scaffold_178_12
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

12760..13269
DNA (510bp) protein (170aa)
transcriptional regulator, BadM/Rrf2 family n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B37BB4
transcriptional regulator Tax=RBG_16_KB1_OP1_55_9_curated
hypothetical protein
13_2_20cm_scaffold_178_13
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

13262..14275
DNA (1014bp) protein (338aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITH0_KORVE
ABC transporter, substrate-binding protein, aliphatic sulphonates; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
aliphatic sulfonates ABC transporter substrate-binding protein
13_2_20cm_scaffold_178_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

14272..15198
DNA (927bp) protein (309aa)
ABC transporter, ATPase subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITG9_KORVE rbh
ABC transporter ATPase
ABC transporter, ATPase subunit {ECO:0000313|EMBL:ABF39831.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatili
13_2_20cm_scaffold_178_15
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

15182..15943
DNA (762bp) protein (254aa)
ABC aliphatic sulfonate transporter, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITG8_KORVE rbh
ABC aliphatic sulfonate transporter, inner membrane subunit
ABC aliphatic sulfonate transporter, inner membrane subunit {ECO:0000313|EMBL:ABF39832.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;"
13_2_20cm_scaffold_178_16
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

16122..17795
DNA (1674bp) protein (558aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITG4_KORVE
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_2_20cm_scaffold_178_17
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

17991..18968
DNA (978bp) protein (326aa)
GalE; UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
UDP-glucose 4-epimerase n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QSC9_CHLT3
UDP-glucose 4-epimerase
13_2_20cm_scaffold_178_18
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(19039..20586)
DNA (1548bp) protein (516aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
Lysine--tRNA ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS62_KORVE rbh
lysyl-tRNA synthetase
13_2_20cm_scaffold_178_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

20771..21127
DNA (357bp) protein (119aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit
NADH-quinone oxidoreductase subunit A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS61_KORVE
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
13_2_20cm_scaffold_178_20
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21203..21517
DNA (315bp) protein (105aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFO66914.1}; TaxID=1499107 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SCAD
Putative uncharacterized protein id=2257256 bin=GWB2_Elusimicrobia_63_16 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_Elusimicrobia_63_16 organism_group=Elusimicrobia
13_2_20cm_scaffold_178_21
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

21786..22193
DNA (408bp) protein (136aa)
NADH-quinone oxidoreductase {ECO:0000256|RuleBase:RU003582}; EC=1.6.5.11 {ECO:0000256|RuleBase:RU003582};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatu
NADH-quinone oxidoreductase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS60_KORVE
NADH (or F420H2) dehydrogenase subunit C
13_2_20cm_scaffold_178_22
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

22190..23335
DNA (1146bp) protein (382aa)
NADH-quinone oxidoreductase subunit D 1 {ECO:0000255|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D 1 {ECO:0000255|HAMAP-Rule:MF_01358}; NDH-1 sub
NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=NUOD1_KORVE rbh
NADH dehydrogenase I subunit D
13_2_20cm_scaffold_178_23
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

23335..24585
DNA (1251bp) protein (417aa)
NADH-quinone oxidoreductase subunit H 1 {ECO:0000255|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H 1 {ECO:0000255|HAMAP-Rule:MF_01350}; NDH-1 sub
NADH-quinone oxidoreductase subunit H 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=NUOH1_KORVE rbh
respiratory-chain NADH dehydrogenase subunit 1
13_2_20cm_scaffold_178_24
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

24585..25094
DNA (510bp) protein (170aa)
NADH dehydrogenase subunit J {ECO:0000313|EMBL:ABF40294.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABF40294.1};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteria
NADH dehydrogenase subunit J n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS56_KORVE
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
13_2_20cm_scaffold_178_25
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

25131..25436
DNA (306bp) protein (102aa)
NADH-quinone oxidoreductase subunit K 1 {ECO:0000255|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K 1 {ECO:0000255|HAMAP-Rule:MF_01456}; NDH-1 sub
NADH-quinone oxidoreductase subunit K 1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=NUOK1_KORVE
NADH-ubiquinone oxidoreductase, chain 4L
13_2_20cm_scaffold_178_26
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

25549..27099
DNA (1551bp) protein (517aa)
NADH dehydrogenase subunit L {ECO:0000313|EMBL:ABF40296.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABF40296.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Ko
NADH dehydrogenase subunit L n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS54_KORVE rbh
proton-translocating NADH-quinone oxidoreductase subunit L
13_2_20cm_scaffold_178_27
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

27099..27572
DNA (474bp) protein (158aa)
NADH dehydrogenase subunit L {ECO:0000313|EMBL:ABF40296.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABF40296.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Ko
NADH dehydrogenase subunit L n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS54_KORVE
proton-translocating NADH-quinone oxidoreductase subunit L
13_2_20cm_scaffold_178_28
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

27617..28978
DNA (1362bp) protein (454aa)
NADH dehydrogenase subunit M {ECO:0000313|EMBL:ABF40297.1}; EC=1.6.5.3 {ECO:0000313|EMBL:ABF40297.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Ko
NADH dehydrogenase subunit M n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS53_KORVE
proton-translocating NADH-quinone oxidoreductase subunit M
Displaying 28 items

View Taxonomy