ggKbase home page

13_2_20cm_scaffold_1003

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1003_1
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1..639)
DNA (639bp) protein (213aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase {ECO:0000313|EMBL:ABF40884.1}; EC=2.5.1.54 {ECO:0000313|EMBL:ABF40884.1};; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidoba
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQG6_KORVE
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
13_2_20cm_scaffold_1003_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

776..1978
DNA (1203bp) protein (401aa)
endonuclease IV (EC:3.1.21.-); K01151 deoxyribonuclease IV [EC:3.1.21.2] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
endonuclease IV (EC:3.1.21.-)
Probable endonuclease 4 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=END4_SOLUE
13_2_20cm_scaffold_1003_3
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists


1985..4558
DNA (2574bp) protein (858aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=SYL_SOLUE
13_2_20cm_scaffold_1003_4
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4568..6199
DNA (1632bp) protein (544aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
GMP synthase n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035DD3BC
13_2_20cm_scaffold_1003_5

Not on your lists

comp(6379..6750)
DNA (372bp) protein (124aa)
Transcriptional regulator, XRE family (Fragment) n=1 Tax=mine drainage metagenome RepID=T0ZP95_9ZZZZ
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EQD31625.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metage
DNA-binding protein
13_2_20cm_scaffold_1003_6
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

6867..7517
DNA (651bp) protein (217aa)
RNA polymerase sigma factor n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YV2_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter u
13_2_20cm_scaffold_1003_7
unknown

Not on your lists

7549..8061
DNA (513bp) protein (171aa)

This feature has no annotations

13_2_20cm_scaffold_1003_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

8058..8459
DNA (402bp) protein (134aa)
hypothetical protein id=14430239 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
13_2_20cm_scaffold_1003_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8481..9539)
DNA (1059bp) protein (353aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQ21_PARL1 rbh
alcohol dehydrogenase
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ABS62004.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source=
13_2_20cm_scaffold_1003_10
CG_Proteo_01, Proteobacteria, Bacteria

Not on your lists

comp(9484..9975)
DNA (492bp) protein (164aa)
Single-stranded DNA-binding protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CI24_MYXFH
single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein Tax=CG_Proteo_01
single-strand binding protein
13_2_20cm_scaffold_1003_11
Maribacter sp. HTCC2170, Maribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10156..11172
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003647316
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAR00149.1}; TaxID=313603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter.;" source="Maribacter sp. (strain
13_2_20cm_scaffold_1003_12
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11383..11700
DNA (318bp) protein (106aa)
Tol biopolymer transport system, periplasmic protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11V66_CYTH3
tolB; tol biopolymer transport system, periplasmic protein
Tol biopolymer transport system, periplasmic protein {ECO:0000313|EMBL:ABG58700.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytopha
Displaying 12 items

View Taxonomy