ggKbase home page

13_2_20cm_scaffold_107

Search features with annotation key words

Displaying items 1-30 of 37 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_107_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(20..2047)
DNA (2028bp) protein (676aa)
molybdopterin oxidoreductase id=14626787 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
molybdopterin oxidoreductase Tax=CSP1_6_Rokubacteria
molybdopterin oxidoreductase
13_2_20cm_scaffold_107_2
unknown

Not on your lists

2140..2502
DNA (363bp) protein (121aa)

This feature has no annotations

13_2_20cm_scaffold_107_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2514..3578)
DNA (1065bp) protein (355aa)
phospho-2-dehydro-3-deoxyheptonate aldolase; K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=GWA2_Rokubacteria_73_35_curated
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXF1_RUBXD
13_2_20cm_scaffold_107_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3586..4425)
DNA (840bp) protein (280aa)
UbiE/COQ5 family methyltransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Predicted methyltransferase (UbiE/COQ5 family) id=2432291 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylase involved in ubiquinone/menaquinone biosynthesis
13_2_20cm_scaffold_107_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4509..5570
DNA (1062bp) protein (354aa)
deoxyhypusine synthase; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
deoxyhypusine synthase (EC:2.5.1.46)
Deoxyhypusine synthase id=2432286 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Caldiarchaeum subterraneum genus=Candidatus Caldiarchaeum taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_107_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5592..6635)
DNA (1044bp) protein (348aa)
murB; UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UDP-N-acetylenolpyruvoylglucosamine reductase id=4793438 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_107_7
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6640..7239)
DNA (600bp) protein (200aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxamine 5'-phosphate oxidase n=1 Tax=gamma proteobacterium BDW918 RepID=I2JF34_9GAMM
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:EIF41586.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
13_2_20cm_scaffold_107_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7258..8136
DNA (879bp) protein (293aa)
Alpha/beta hydrolase fold protein id=2883278 bin=GWA2_Methylomirabilis_73_35 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
alpha/beta hydrolase fold protein Tax=GWA2_Rokubacteria_73_35_curated
alpha/beta hydrolase fold protein
13_2_20cm_scaffold_107_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8136..8882
DNA (747bp) protein (249aa)
Silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=GWC2_Rokubacteria_70_16_curated
Silent information regulator protein Sir2 id=4803147 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Silent information regulator protein Sir2
13_2_20cm_scaffold_107_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(8895..9926)
DNA (1032bp) protein (344aa)
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK52_9BACT
alcohol dehydrogenase
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:CBE69674.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomira
13_2_20cm_scaffold_107_11
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10015..10980
DNA (966bp) protein (322aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (EC:4.1.1.68)
5-carboxymethyl-2-hydroxymuconate Delta-isomerase {ECO:0000313|EMBL:ACD15899.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ACD15899.1};; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
5-carboxymethyl-2-hydroxymuconate Delta-isomerase n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2T2T8_BURPP
13_2_20cm_scaffold_107_12
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10998..12110
DNA (1113bp) protein (371aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TRS1_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:ETX00088.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
TIM-barrel fold metal-dependent hydrolase
13_2_20cm_scaffold_107_13
bacterium YEK0313, Bacteria

Not on your lists

12237..13316
DNA (1080bp) protein (360aa)
Putative TRAP dicarboxylate transporter, subunit DctP n=1 Tax=Variovorax paradoxus B4 RepID=T1XMC3_VARPD rbh
2,3-diketo-L-gulonate-binding periplasmic protein YiaO {ECO:0000313|EMBL:CEJ14273.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative TRAP dicarboxylate transporter, subunit DctP
13_2_20cm_scaffold_107_14
RIFOXYD12_FULL_Planctomycetes_42_12_curated, Planctomycetes, Bacteria

Not on your lists

13339..14505
DNA (1167bp) protein (389aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] Tax=RIFOXYD12_FULL_Planctomycetes_42_12_curated
alanine racemase (EC:5.1.1.1)
UPI00039A69E4 related cluster n=1 Tax=unknown RepID=UPI00039A69E4
13_2_20cm_scaffold_107_15
bacterium YEK0313, Bacteria

Not on your lists

14505..15125
DNA (621bp) protein (207aa)
Putative TRAP dicarboxylate transporter, subunit DctQ n=1 Tax=Variovorax paradoxus B4 RepID=T1XLU3_VARPD
Tripartite ATP-independent periplasmic transporters, DctQ component {ECO:0000313|EMBL:CEJ16082.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative TRAP dicarboxylate transporter, subunit DctQ
13_2_20cm_scaffold_107_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15122..16492
DNA (1371bp) protein (457aa)
TRAP dicarboxylate transporter, subunit DctM n=1 Tax=Variovorax paradoxus B4 RepID=T1XL04_VARPD rbh
dctM; TRAP dicarboxylate transporter, subunit DctM
TRAP dicarboxylate transporter, subunit DctM {ECO:0000313|EMBL:AGU53268.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
13_2_20cm_scaffold_107_17
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16509..18644
DNA (2136bp) protein (712aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036E3381
Uncharacterized protein {ECO:0000313|EMBL:ETX02452.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
5-oxoprolinase ATP-hydrolyzing
13_2_20cm_scaffold_107_18
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18644..20407
DNA (1764bp) protein (588aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037399BB
Uncharacterized protein {ECO:0000313|EMBL:ETX02451.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
5-oxoprolinase
13_2_20cm_scaffold_107_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20420..21061)
DNA (642bp) protein (214aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA polymerase sigma-70 factor, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14623584 bin=bin5_DeltaP species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin5_DeltaP organism_group=Deltaproteobacteria
sigW5; ECF subfamily RNA polymerase sigma factor
13_2_20cm_scaffold_107_20
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21058..21633)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI000363E6DB
Uncharacterized protein {ECO:0000313|EMBL:EOD62458.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM
hypothetical protein
13_2_20cm_scaffold_107_21
unknown

Not on your lists

comp(21656..22066)
DNA (411bp) protein (137aa)

This feature has no annotations

13_2_20cm_scaffold_107_22
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(22100..23023)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035F3BB8
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ABJ82090.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="
13_2_20cm_scaffold_107_23
Mycobacterium yongonense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23052..23402)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Mycobacterium yongonense 05-1390 RepID=S4ZKL5_9MYCO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP65862.1}; TaxID=1138871 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source=
13_2_20cm_scaffold_107_24
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24034..24834)
DNA (801bp) protein (267aa)
Transmembrane transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S9Z1_9BURK
putative transmembrane protein
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG18238.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiacea
13_2_20cm_scaffold_107_25
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(24845..25390)
DNA (546bp) protein (182aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14430305 bin=bin3_NC10 species=unknown genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=CSP1_5_NC10
rpoE; RNA polymerase sigma-70 factor, sigma-E factor
13_2_20cm_scaffold_107_26
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(25454..26839)
DNA (1386bp) protein (462aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGM4_9CHLR
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:CCF83836.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacte
40-residue YVTN family beta-propeller repeat-containing protein
13_2_20cm_scaffold_107_27
unknown

Not on your lists

comp(26833..27234)
DNA (402bp) protein (134aa)

This feature has no annotations

13_2_20cm_scaffold_107_28
unknown

Not on your lists

27436..27555
DNA (120bp) protein (40aa)

This feature has no annotations

13_2_20cm_scaffold_107_29
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28145..29473
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P028_9DELT rbh
Major facilitator transporter {ECO:0000313|EMBL:KFA87984.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" sour
major facilitator family transporter
13_2_20cm_scaffold_107_30
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(29499..30767)
DNA (1269bp) protein (423aa)
Probable Leu/Ile/Val-binding protein id=3775401 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Pelagibacter ubique genus=Candidatus Pelagibacter taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
braC; Leu/Ile/Val-binding protein Tax=GWA2_Rokubacteria_70_23_curated
branched-chain amino acid ABC transporter substrate-binding protein
Displaying items 1-30 of 37 in total

View Taxonomy