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13_2_20cm_scaffold_1147

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1147_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(96..1673)
DNA (1578bp) protein (526aa)
family 3 adenylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Family 3 adenylate cyclase id=4845186 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 3 adenylate cyclase
13_2_20cm_scaffold_1147_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1712..2092)
DNA (381bp) protein (127aa)
Transcriptional regulatory protein id=4558721 bin=GWA2_Methylomirabilis_73_35 species=ACD65 genus=ACD65 taxon_order=ACD65 taxon_class=ACD65 phylum=PER tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yycF; transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
response regulator receiver protein
13_2_20cm_scaffold_1147_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2092..5148)
DNA (3057bp) protein (1019aa)
two-component sensor histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Multi-sensor signal transduction histidine kinase id=4558719 bin=GWA2_Methylomirabilis_73_35 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
multi-sensor signal transduction histidine kinase
13_2_20cm_scaffold_1147_4
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5148..5753)
DNA (606bp) protein (202aa)
Protein with response regulator receiver domain id=4886938 bin=GWC2_Deltaproteobacteria_56_8 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
response regulator receiver protein Tax=GWB2_Deltaproteobacteria_55_19_curated
Phosphate regulon transcriptional regulatory protein PhoB (SphR)
13_2_20cm_scaffold_1147_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6201..6851
DNA (651bp) protein (217aa)
murein transglycosylase (EC:3.2.1.1)
Soluble lytic murein transglycosylase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Soluble lytic murein transglycosylase-like protein id=4894272 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1147_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6863..7339)
DNA (477bp) protein (159aa)
Thioesterase superfamily n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMN8_9BRAD
thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thioesterase superfamily protein
13_2_20cm_scaffold_1147_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7336..9276)
DNA (1941bp) protein (647aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2995738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NHL repeat family protein
13_2_20cm_scaffold_1147_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10001..10594
DNA (594bp) protein (198aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein id=3162221 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1147_9
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10588..11016
DNA (429bp) protein (143aa)
Large-conductance mechanosensitive channel n=2 Tax=Geobacter sulfurreducens RepID=MSCL_GEOSL
Large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=CG_Delta_02
mechanosensitive ion channel protein MscL
13_2_20cm_scaffold_1147_10
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11031..11339)
DNA (309bp) protein (103aa)
putative sulfite:cytochrome c oxidoreductase subunit B Tax=RBG_13_Deltaproteobacteria_52_11_curated
Sulfite:cytochrome c oxidoreductase subunit B id=2992366 bin=GWF2_Geobacter_54_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
sulfite:cytochrome C oxidoreductase subunit B
13_2_20cm_scaffold_1147_11
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11350..12546)
DNA (1197bp) protein (399aa)
Twin-arginine translocation pathway signal Tax=RBG_13_Deltaproteobacteria_52_11_curated
Oxidoreductase molybdopterin binding id=4507361 bin=GWC2_Geobacteraceae_55_20 species=Sulfurihydrogenibium azorense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
molybdopterin binding oxidoreductase
13_2_20cm_scaffold_1147_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

12648..13151
DNA (504bp) protein (168aa)
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14626943 bin=bin7_NC10_sister species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=CSP1_6_Rokubacteria
ECF subfamily RNA polymerase sigma-24 subunit
13_2_20cm_scaffold_1147_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13156..13848
DNA (693bp) protein (231aa)
methylated-DNA--protein-cysteine methyltransferase id=14626944 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase Tax=CSP1_6_Rokubacteria
methylated-DNA--protein-cysteine methyltransferase
13_2_20cm_scaffold_1147_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13887..14708
DNA (822bp) protein (274aa)
amidohydrolase 2 id=14627726 bin=bin7_NC10_sister species=Ruegeria conchae genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amidohydrolase 2 Tax=CSP1_6_Rokubacteria
amidohydrolase 2
13_2_20cm_scaffold_1147_15
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(14705..15139)
DNA (435bp) protein (145aa)
NUDIX hydrolase n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U668_OCEP5
nudix hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADR35941.1}; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 1497
13_2_20cm_scaffold_1147_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15189..16592)
DNA (1404bp) protein (468aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWC2_Rokubacteria_70_16_curated
Amidase id=3014927 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_2_20cm_scaffold_1147_17
unknown

Not on your lists

comp(16585..16731)
DNA (147bp) protein (49aa)

This feature has no annotations

13_2_20cm_scaffold_1147_18
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(16777..17652)
DNA (876bp) protein (292aa)
Metal dependent phosphohydrolase id=3692798 bin=GWF2_Lentisphaerae_57_35 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
metal dependent phosphohydrolase
Tax=BJP_IG2158_Zixibacteria_48_33
13_2_20cm_scaffold_1147_19
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

18117..20645
DNA (2529bp) protein (843aa)
adenylate/guanylate cyclase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
adenylate/guanylate cyclase id=14625653 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate/guanylate cyclase
13_2_20cm_scaffold_1147_20

Not on your lists

20723..21328
DNA (606bp) protein (202aa)
Marine sediment metagenome DNA, contig: S01H1_S17708 {ECO:0000313|EMBL:GAG28052.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_2_20cm_scaffold_1147_21
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21325..22674)
DNA (1350bp) protein (450aa)
putative hydrolase (EC:3.8.1.-)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RGV0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ESR25371.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense A
13_2_20cm_scaffold_1147_22
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22671..23438)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036D5270 rbh
glutamine ABC transporter ATP-binding protein
Glutamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAD40047.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbi
13_2_20cm_scaffold_1147_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23453..24106)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000361A403
ABC transporter permease
Putative ABC transporter permease component {ECO:0000313|EMBL:CAK10297.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
13_2_20cm_scaffold_1147_24
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24114..24950)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000365F68D rbh
ABC transporter substrate-binding protein
Putative substrate binding periplasmic component of ABC transporter {ECO:0000313|EMBL:CAK10298.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizo
13_2_20cm_scaffold_1147_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24987..25703)
DNA (717bp) protein (239aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type IV pilus assembly protein PilB
Displaying 25 items

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