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13_2_20cm_scaffold_1745

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1745_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(285..557)
DNA (273bp) protein (91aa)
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histone family protein DNA-binding protein id=4493677 bin=GWC2_Methylomirabilis_70_16 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
transcriptional regulator HU subunit alpha
13_2_20cm_scaffold_1745_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(607..4695)
DNA (4089bp) protein (1363aa)
Multi-sensor signal transduction histidine kinase id=3564564 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor signal transduction histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
GAF sensor hybrid histidine kinase
13_2_20cm_scaffold_1745_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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4853..5251
DNA (399bp) protein (133aa)
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIJ9_SINAD
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA28643.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila
13_2_20cm_scaffold_1745_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5279..5785
DNA (507bp) protein (169aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4731536 bin=GWC2_Methylomirabilis_70_24 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_scaffold_1745_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5795..7237
DNA (1443bp) protein (481aa)
ubiD1; 3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD (EC:4.1.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD id=3564567 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
menaquinone biosynthesis decarboxylase
13_2_20cm_scaffold_1745_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7324..8094
DNA (771bp) protein (257aa)
4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-hydroxybenzoate polyprenyltransferase id=4493686 bin=GWC2_Methylomirabilis_70_16 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoate polyprenyltransferase
13_2_20cm_scaffold_1745_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8130..8795
DNA (666bp) protein (222aa)
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Demethylmenaquinone methyltransferase id=3564574 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiquinone/menaquinone biosynthesis methyltransferase
13_2_20cm_scaffold_1745_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(8930..9802)
DNA (873bp) protein (291aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Alpha/beta hydrolase fold id=3564582 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia cenocepacia genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase
13_2_20cm_scaffold_1745_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9857..11434
DNA (1578bp) protein (526aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3837101 bin=GWC2_Methylomirabilis_70_24 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
GTP-binding protein
13_2_20cm_scaffold_1745_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11431..12390
DNA (960bp) protein (320aa)
putative xylanase/chitin deacetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative xylanase/chitin deacetylase id=3837102 bin=GWC2_Methylomirabilis_70_24 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative xylanase/chitin deacetylase
13_2_20cm_scaffold_1745_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12490..14103)
DNA (1614bp) protein (538aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized conserved protein UCP016719 id=3564591 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 11 items

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