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13_2_20cm_scaffold_2421

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2421_1
unknown

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comp(1084..1353)
DNA (270bp) protein (90aa)

This feature has no annotations

13_2_20cm_scaffold_2421_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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1817..2401
DNA (585bp) protein (195aa)
yodT; hypothetical protein id=14625581 bin=bin7_NC10_sister species=Brevibacillus sp. CF112 genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
yodT; hypothetical protein Tax=CSP1_6_Rokubacteria
aminotransferase
13_2_20cm_scaffold_2421_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2406..3137
DNA (732bp) protein (244aa)
Putative uncharacterized protein id=5015987 bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_2421_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3186..6911
DNA (3726bp) protein (1242aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hydantoinase/oxoprolinase containing both A and B domains n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0JYF2_CUPNH rbh
hyuAB; hydantoinase/oxoprolinase
13_2_20cm_scaffold_2421_5
unknown

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7258..7617
DNA (360bp) protein (120aa)

This feature has no annotations

13_2_20cm_scaffold_2421_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7614..8966)
DNA (1353bp) protein (451aa)
pilR2; nitrogen regulation protein NR(I); K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=4814770 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acetoacetate metabolism regulatory protein AtoC
13_2_20cm_scaffold_2421_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9079..9513
DNA (435bp) protein (145aa)
trxA; thioredoxin 1, redox factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thioredoxin id=4814769 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
trxA; thioredoxin 1, redox factor
13_2_20cm_scaffold_2421_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9462..10916
DNA (1455bp) protein (485aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
anthranilate synthase component I (EC:4.1.3.27)
Fragment of Anthranilate synthase id=3775484 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2421_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10996..11559
DNA (564bp) protein (188aa)
trpG; anthranilate synthase component II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glutamine amidotransferase of anthranilate synthase id=3234896 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glutamine amidotransferase
13_2_20cm_scaffold_2421_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11556..12587
DNA (1032bp) protein (344aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine-monophosphate kinase id=1724736 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiL; thiamine-monophosphate kinase
13_2_20cm_scaffold_2421_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12580..15015
DNA (2436bp) protein (812aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3775497 bin=GWF2_Methylomirabilis_70_14 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2421_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15033..15707
DNA (675bp) protein (225aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dienelactone hydrolase-like enzyme id=1724740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Dienelactone hydrolase family
13_2_20cm_scaffold_2421_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15749..16465
DNA (717bp) protein (239aa)
Crp/Fnr family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Crp/Fnr family transcriptional regulator id=14625479 bin=bin7_NC10_sister species=Nocardioides sp. CF8 genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
Crp/Fnr family transcriptional regulator
13_2_20cm_scaffold_2421_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(16466..16954)
DNA (489bp) protein (163aa)
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L17
13_2_20cm_scaffold_2421_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(16951..17937)
DNA (987bp) protein (329aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2421_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(17956..18579)
DNA (624bp) protein (208aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S4 id=4666314 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S4
13_2_20cm_scaffold_2421_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(18591..19016)
DNA (426bp) protein (142aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S11 id=4666313 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
13_2_20cm_scaffold_2421_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(19020..19442)
DNA (423bp) protein (141aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=14625537 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsM; 30S ribosomal protein S13
13_2_20cm_scaffold_2421_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19624..19842)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 id=4666310 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
infA; translation initiation factor IF-1
13_2_20cm_scaffold_2421_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19842..20090)
DNA (249bp) protein (83aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
methionine aminopeptidase, type I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methionine aminopeptidase id=4666309 bin=GWA2_Methylomirabilis_73_35 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 20 items

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