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13_2_20cm_scaffold_3778

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_3778_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..209)
DNA (207bp) protein (69aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase, type I Tax=GWA2_Rokubacteria_73_35_curated
methionine aminopeptidase, type I
13_2_20cm_scaffold_3778_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(206..850)
DNA (645bp) protein (215aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14625534 bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=CSP1_6_Rokubacteria
adenylate kinase (EC:2.7.4.3)
13_2_20cm_scaffold_3778_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(857..2185)
DNA (1329bp) protein (443aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
13_2_20cm_scaffold_3778_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(2182..2649)
DNA (468bp) protein (156aa)
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L15 id=4666306 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L15
13_2_20cm_scaffold_3778_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(2639..2827)
DNA (189bp) protein (63aa)
50S ribosomal protein L30 id=4666305 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=GWA2_Rokubacteria_73_35_curated
rpmD; 50S ribosomal protein L30
13_2_20cm_scaffold_3778_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(2808..3347)
DNA (540bp) protein (180aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S5 id=4666304 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
rpsE; 30S ribosomal protein S5
13_2_20cm_scaffold_3778_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(3368..3733)
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L18 id=4799428 bin=GWC2_Methylomirabilis_70_24 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L18
13_2_20cm_scaffold_3778_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(3730..4209)
DNA (480bp) protein (160aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L6 id=4666302 bin=GWA2_Methylomirabilis_73_35 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L6
13_2_20cm_scaffold_3778_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(4220..4615)
DNA (396bp) protein (132aa)
rpsH; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=14625527 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rpsH; 30S ribosomal protein S8
13_2_20cm_scaffold_3778_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(4623..4808)
DNA (186bp) protein (62aa)
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14 Tax=GWA2_Rokubacteria_73_35_curated
rpsZ; 30S ribosomal protein S14
13_2_20cm_scaffold_3778_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(4820..5500)
DNA (681bp) protein (227aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L5 id=4799432 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplE; 50S ribosomal protein L5
13_2_20cm_scaffold_3778_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(5506..5835)
DNA (330bp) protein (110aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L24 id=4666300 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplX; 50S ribosomal protein L24
13_2_20cm_scaffold_3778_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(5835..6185)
DNA (351bp) protein (117aa)
rplN; Ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L14 id=4666299 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplN; 50S ribosomal protein L14
13_2_20cm_scaffold_3778_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(6207..6461)
DNA (255bp) protein (85aa)
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S17 id=4666298 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S17
13_2_20cm_scaffold_3778_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


comp(6465..6815)
DNA (351bp) protein (117aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
50S ribosomal protein L29 id=4666297 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L29
13_2_20cm_scaffold_3778_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(6825..7241)
DNA (417bp) protein (139aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L16 id=4716775 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplP; 50S ribosomal protein L16
13_2_20cm_scaffold_3778_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(7252..7896)
DNA (645bp) protein (215aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=GWA2_Rokubacteria_73_35_curated
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=14625519 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsC; 30S ribosomal protein S3
13_2_20cm_scaffold_3778_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(7896..8399)
DNA (504bp) protein (168aa)
ribosomal protein L22, bacterial type Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L22 id=4666294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplV; 50S ribosomal protein L22
13_2_20cm_scaffold_3778_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(8403..8696)
DNA (294bp) protein (98aa)
SSU ribosomal protein S19p (S15e) id=4666293 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=GWA2_Rokubacteria_73_35_curated
rpsS; 30S ribosomal protein S19
13_2_20cm_scaffold_3778_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(8706..9530)
DNA (825bp) protein (275aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L2 id=4799441 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L2
13_2_20cm_scaffold_3778_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(9534..9827)
DNA (294bp) protein (98aa)
50S ribosomal protein L23 id=1776817 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L25/L23
13_2_20cm_scaffold_3778_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


comp(9824..10153)
DNA (330bp) protein (110aa)
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 id=14625514 bin=bin7_NC10_sister species=Alicyclobacillus hesperidum genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=CSP1_6_Rokubacteria
ribosomal protein L4/L1e
13_2_20cm_scaffold_3778_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(10385..11062)
DNA (678bp) protein (226aa)
50S ribosomal protein L3 id=1776815 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplC; 50S ribosomal protein L3 Tax=GWA2_Rokubacteria_73_35_curated
rplC; 50S ribosomal protein L3
13_2_20cm_scaffold_3778_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(11101..11421)
DNA (321bp) protein (107aa)
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 id=14625512 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S10
13_2_20cm_scaffold_3778_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11425..11556)
DNA (132bp) protein (44aa)
tufB; Elongation factor Tu (EF-Tu) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Elongation factor Tu id=1776813 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tufB; Elongation factor Tu (EF-Tu)
13_2_20cm_scaffold_3778_26
R_OD1_Falkowbacteria_46_11b, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

11631..11954
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5RJX3_9FIRM
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_OD1_Falkowbacteria_46_11b_curated
Displaying 26 items

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