ggKbase home page

13_2_20cm_scaffold_472

Search features with annotation key words

Displaying 23 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_472_1

Not on your lists

1..606
DNA (606bp) protein (202aa)
Dehydrogenase with different specificities, short-chain alcohol dehydrogenases like protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE88_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:KKN05952.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
short-chain alcohol dehydrogenase-like protein
13_2_20cm_scaffold_472_2
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

625..1920
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037A0A12
Luciferase family protein {ECO:0000313|EMBL:GAK45994.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
luciferase family protein
13_2_20cm_scaffold_472_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1963..2385
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HY04_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54370.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhiz
protein of unknown function DUF1486
13_2_20cm_scaffold_472_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2460..2984)
DNA (525bp) protein (175aa)
Pfpi family intracellular protease; K05520 protease I [EC:3.2.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Intracellular protease, PfpI family id=4900374 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Pfpi family intracellular protease
13_2_20cm_scaffold_472_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2998..3162)
DNA (165bp) protein (55aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative regulatory protein, FmdB family id=4900375 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FmdB family regulatory protein
13_2_20cm_scaffold_472_6
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(3191..4501)
DNA (1311bp) protein (437aa)
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
hypothetical protein n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI0003457519
succinate-semialdehyde dehydrogenase
13_2_20cm_scaffold_472_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4804..6063)
DNA (1260bp) protein (420aa)
amidase Tax=GWA2_Rokubacteria_73_35_curated
amidase id=14430439 bin=bin3_NC10 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
amidase
13_2_20cm_scaffold_472_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6349..8343)
DNA (1995bp) protein (665aa)
TRAP C4-dicarboxylate transport system permease DctM Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative TRAP-type C4-dicarboxylate transport system, large permease component id=4900377 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TRAP dicarboxylate transporter subunit DctM
13_2_20cm_scaffold_472_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8340..9008)
DNA (669bp) protein (223aa)
Putative membrane protein id=4900378 bin=GWA2_Methylomirabilis_73_35 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transporter dctQ related transmembrane protein Tax=GWA2_Rokubacteria_73_35_curated
transporter dctQ related transmembrane protein
13_2_20cm_scaffold_472_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9080..10264)
DNA (1185bp) protein (395aa)
Putative uncharacterized protein id=4900379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
C4-dicarboxylate ABC transporter
13_2_20cm_scaffold_472_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10391..11068)
DNA (678bp) protein (226aa)
protease Do (EC:3.4.21.108) id=14625822 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
htrA; periplasmic serine protease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
protease Do
13_2_20cm_scaffold_472_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11068..11706)
DNA (639bp) protein (213aa)
lon3; ATP-dependent protease La; K07157 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lon3; ATP-dependent protease La; K07157 id=14625820 bin=bin7_NC10_sister species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
lon3; ATP-dependent protease La
13_2_20cm_scaffold_472_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11715..12824)
DNA (1110bp) protein (370aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Mrp id=4554975 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_scaffold_472_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13085..13567
DNA (483bp) protein (161aa)
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
flavin reductase domain-containing protein id=14625818 bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
flavin reductase domain protein FMN-binding protein
13_2_20cm_scaffold_472_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

13564..14643
DNA (1080bp) protein (360aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
lpsC; perosamine synthetase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DegT/DnrJ/EryC1/StrS aminotransferase id=4600877 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_472_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

14663..15763
DNA (1101bp) protein (367aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
group 1 glycosyl transferase id=14625816 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
group 1 glycosyl transferase
13_2_20cm_scaffold_472_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15760..17508
DNA (1749bp) protein (583aa)
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lipid A export ATP-binding/permease protein MsbA id=4600885 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phospholipid-lipopolysaccharide ABC transporter
13_2_20cm_scaffold_472_18
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17558..18118)
DNA (561bp) protein (187aa)
NADPH-dependent FMN reductase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9NZJ1_9DELT
NADPH-dependent FMN reductase {ECO:0000313|EMBL:EPX55447.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" sour
NADPH-dependent fmn reductase
13_2_20cm_scaffold_472_19
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18226..19929)
DNA (1704bp) protein (568aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEF8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ30254.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
molybdopterin-binding domain of aldehyde dehydrogenase family protein
13_2_20cm_scaffold_472_20
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19968..20348)
DNA (381bp) protein (127aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EKL9_METSB
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:ACK51389.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Be
13_2_20cm_scaffold_472_21
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20345..20653)
DNA (309bp) protein (103aa)
2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Burkholderia cepacia GG4 RepID=J7JGX8_BURCE
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KEZ03015.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp.
2Fe-2S iron-sulfur cluster binding domain-containing protein
13_2_20cm_scaffold_472_22
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20650..20790)
DNA (141bp) protein (47aa)
Isoquinoline 1-oxidoreductase alpha subunit {ECO:0000313|EMBL:ELS25179.1}; EC=1.3.99.16 {ECO:0000313|EMBL:ELS25179.1};; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomona
Isoquinoline 1-oxidoreductase alpha subunit n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MEE9_PSEPS
oxidoreductase
13_2_20cm_scaffold_472_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20830..21198)
DNA (369bp) protein (123aa)
ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ECF subfamily RNA polymerase sigma factor id=4751264 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ECF subfamily RNA polymerase sigma-24 factor
Displaying 23 items

View Taxonomy