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13_2_20cm_scaffold_542

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_542_1
Dictyostelium fasciculatum, Dictyostelium, Dictyosteliida, Eukaryota

Not on your lists

comp(1..1986)
DNA (1986bp) protein (662aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Dictyostelium fasciculatum (strain SH3) RepID=F4PWU5_DICFS
Putative uncharacterized protein {ECO:0000313|EMBL:EGG20459.1}; Flags: Fragment;; TaxID=1054147 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium fascicu
hypothetical protein
13_2_20cm_scaffold_542_2
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2278..2967)
DNA (690bp) protein (230aa)
Putative uncharacterized protein id=2009011 bin=GWB2_Proteobacteria_55_19 species=Polysphondylium pallidum genus=Polysphondylium taxon_order=Dictyosteliida taxon_class=unknown phylum=unknown tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
PQQ repeat-containing protein Tax=GWB2_Deltaproteobacteria_55_19_curated
hypothetical protein
13_2_20cm_scaffold_542_3
unknown

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3153..3533
DNA (381bp) protein (127aa)

This feature has no annotations

13_2_20cm_scaffold_542_4
unknown

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3552..3725
DNA (174bp) protein (58aa)

This feature has no annotations

13_2_20cm_scaffold_542_5
unknown

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comp(4651..4755)
DNA (105bp) protein (35aa)

This feature has no annotations

13_2_20cm_scaffold_542_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4833..6470
DNA (1638bp) protein (546aa)
gamma-glutamyltransferase 2 (EC:2.3.2.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Gamma-glutamyltransferase id=2558577 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gamma-glutamyltranspeptidase
13_2_20cm_scaffold_542_7
unknown

Not on your lists

6467..6673
DNA (207bp) protein (69aa)

This feature has no annotations

13_2_20cm_scaffold_542_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6571..7785)
DNA (1215bp) protein (405aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2558561 bin=GWA2_Methylomirabilis_73_35 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_542_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7848..8699
DNA (852bp) protein (284aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2558357 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_542_10
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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8755..9318
DNA (564bp) protein (188aa)
Streptomyces cyclase/dehydrase n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G603_9CYAN
Streptomyces cyclase/dehydrase {ECO:0000313|EMBL:CBN58043.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;
cyclase
13_2_20cm_scaffold_542_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9395..11965
DNA (2571bp) protein (857aa)
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2) Tax=GWA2_Rokubacteria_73_35_curated
putative peptidase M1, membrane alanine aminopeptidase (EC:3.4.11.2)
Putative Peptidase M1, membrane alanine aminopeptidase id=4217952 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_542_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11975..12364)
DNA (390bp) protein (130aa)
Putative Fimbrial protein pilin id=3526412 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fimbrial protein pilin Tax=GWC2_Rokubacteria_70_16_curated
Fimbrial protein pilin
13_2_20cm_scaffold_542_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12562..14001)
DNA (1440bp) protein (480aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626881 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_542_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13998..14669)
DNA (672bp) protein (224aa)
pilW; protein PilW; K02672 type IV pilus assembly protein PilW Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4599608 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_542_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14666..15139)
DNA (474bp) protein (158aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4953737 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_542_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15272..15952)
DNA (681bp) protein (227aa)
Crp/FNR family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, Crp/Fnr family id=1904655 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Crp/Fnr family transcriptional regulator
13_2_20cm_scaffold_542_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

16048..16557
DNA (510bp) protein (170aa)
hypothetical protein id=14627061 bin=bin7_NC10_sister species=Limnohabitans sp. Rim28 genus=Limnohabitans taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_542_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16606..18567
DNA (1962bp) protein (654aa)
peptidase S1 and S6, chymotrypsin/Hap Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase S1 and S6, chymotrypsin/Hap id=3870880 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase S46
13_2_20cm_scaffold_542_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18571..19773)
DNA (1203bp) protein (401aa)
acyl-CoA transferase/carnitine dehydratase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Predicted acyl-CoA transferase/carnitine dehydratase id=3870908 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA transferase/carnitine dehydratase
13_2_20cm_scaffold_542_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20509..20784
DNA (276bp) protein (92aa)
NADPH:quinone reductase (EC:1.6.5.5)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI00036337AF
alcohol dehydrogenase, zinccontaining, putative Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_2_20cm_scaffold_542_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20795..21217
DNA (423bp) protein (141aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] Tax=GWA2_Rokubacteria_73_35_curated
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase id=3870909 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_542_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21214..21396)
DNA (183bp) protein (61aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_2_20cm_scaffold_542_23
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

21553..22383
DNA (831bp) protein (277aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VLB1_9CYAN
Bacterial regulatory protein, luxR family
Bacterial regulatory protein, luxR family {ECO:0000313|EMBL:AHY48228.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.
Displaying 23 items

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