ggKbase home page

13_2_20cm_scaffold_389

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_389_1
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)
Trehalose synthase n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IFC7_9CHLR
Trehalose synthase {ECO:0000313|EMBL:EFO80097.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochlo
trehalose synthase
13_2_20cm_scaffold_389_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

276..953
DNA (678bp) protein (226aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D199_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EDY19791.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428
putative RNA polymerase sigma factor, sigma-24-like protein
13_2_20cm_scaffold_389_3
unknown

Not on your lists

943..1179
DNA (237bp) protein (79aa)

This feature has no annotations

13_2_20cm_scaffold_389_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(1200..1694)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBP1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16143.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_scaffold_389_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(1696..2076)
DNA (381bp) protein (127aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBP2_9BACT
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Elli
ATP-dependent Clp protease adapter protein clpS
13_2_20cm_scaffold_389_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(2187..2441)
DNA (255bp) protein (85aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=497964 species="Bacteria; Ve
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI000360C3AF
hypothetical protein
13_2_20cm_scaffold_389_7
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2618..3892)
DNA (1275bp) protein (425aa)
NADH dehydrogenase, FAD-containing subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DG27_SINAD
NADH dehydrogenase, FAD-containing subunit
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:AGA27621.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source=
13_2_20cm_scaffold_389_8
unknown

Not on your lists

comp(3960..4160)
DNA (201bp) protein (67aa)

This feature has no annotations

13_2_20cm_scaffold_389_9
unknown

Not on your lists

4472..4723
DNA (252bp) protein (84aa)

This feature has no annotations

13_2_20cm_scaffold_389_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

4710..4994
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNM6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58566.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedo
13_2_20cm_scaffold_389_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5004..5339)
DNA (336bp) protein (112aa)
zinc-binding protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A9E9B
Histidine triad (HIT) protein {ECO:0000313|EMBL:EDY16977.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
HIT family hydrolase
13_2_20cm_scaffold_389_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5448..6008)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D973_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16976.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_scaffold_389_13
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(5995..6549)
DNA (555bp) protein (185aa)
NrdR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745E16
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=GWF2_Lentisphaerae_57_35_curated
ATP-cone domain-containing protein
13_2_20cm_scaffold_389_14
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

6652..7569
DNA (918bp) protein (306aa)
multidrug transporter n=1 Tax=Paenibacillus fonticola RepID=UPI00037CDC78
DMT(drug/metabolite transporter) superfamily permease Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein
13_2_20cm_scaffold_389_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7648..10560)
DNA (2913bp) protein (971aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae;
DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GHW1_NITSI
13_2_20cm_scaffold_389_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(10644..11744)
DNA (1101bp) protein (367aa)
DNA protecting protein DprA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D957_9BACT
DNA protecting protein DprA {ECO:0000313|EMBL:EDY17102.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DNA protecting protein DprA
13_2_20cm_scaffold_389_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11814..12257)
DNA (444bp) protein (148aa)
single-stranded DNA-binding protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745814
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spa
single-strand binding protein
13_2_20cm_scaffold_389_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(12276..12605)
DNA (330bp) protein (110aa)
30S ribosomal protein S6 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYA1_9BACT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rpsF; ribosomal protein S6
13_2_20cm_scaffold_389_19
GWA2_OP11_47_9, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(12602..13177)
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EI90_9CHLR
Peptidyl-tRNA hydrolase Tax=GWA2_OP11_47_9
13_2_20cm_scaffold_389_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(13255..13965)
DNA (711bp) protein (237aa)
50S ribosomal protein L25 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYA3_9BACT
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=497964 sp
rplY; 50S ribosomal protein L25 (General stress protein CTC)
13_2_20cm_scaffold_389_21
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(13949..14923)
DNA (975bp) protein (325aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
ribose-phosphate pyrophosphokinase n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036ACE68 rbh
13_2_20cm_scaffold_389_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15028..15861
DNA (834bp) protein (278aa)
Fatty acid desaturase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXT9_9BACT
Fatty acid desaturase {ECO:0000313|EMBL:EDY21087.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
mocD; hydrocarbon oxigenase
Displaying 22 items

View Taxonomy