ggKbase home page

13_2_20cm_scaffold_650

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_650_1
unknown

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)

This feature has no annotations

13_2_20cm_scaffold_650_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(117..440)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D008_9BACT
Mll3692 protein
Uncharacterized protein {ECO:0000313|EMBL:EDY20322.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_2_20cm_scaffold_650_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(533..730)
DNA (198bp) protein (66aa)
Translation initiation factor IF-1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D009_9BACT
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
infA; translation initiation factor IF-1
13_2_20cm_scaffold_650_4

Not on your lists

comp(785..2632)
DNA (1848bp) protein (616aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B34E6B
Lipase maturation factor {ECO:0000313|EMBL:AIA16675.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_2_20cm_scaffold_650_5
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2731..3489)
DNA (759bp) protein (253aa)
xth; exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease III n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PDZ1_9DELT
Exodeoxyribonuclease III {ECO:0000313|EMBL:EPX62575.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="C
13_2_20cm_scaffold_650_6
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(3567..4892)
DNA (1326bp) protein (442aa)
Predicted exonuclease of the beta-lactamase fold involved in RNA processing n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0JVW6_9BACT
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:CCG91385.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiph
ysh1; exonuclease of the beta-lactamase fold involved in RNA processing
13_2_20cm_scaffold_650_7
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4984..5340
DNA (357bp) protein (119aa)
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AGM0_GEOSK
Uncharacterized protein {ECO:0000313|EMBL:KIE43141.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
hypothetical protein
13_2_20cm_scaffold_650_8
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(5349..6392)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HK78_PYRSN
putative peptidase M19 family protein
Uncharacterized protein {ECO:0000313|EMBL:AEC52566.1}; TaxID=342949 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA2).;"
13_2_20cm_scaffold_650_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6529..7539)
DNA (1011bp) protein (337aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniob
Quinolinate synthetase complex, A subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZL3_9BACT rbh
quinolinate synthetase
13_2_20cm_scaffold_650_10
uncultured verrucomicrobium HF0500_18J03, Verrucomicrobia, Bacteria

Not on your lists

comp(7632..8570)
DNA (939bp) protein (313aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=1 Tax=uncultured verrucomicrobium HF0500_18J03 RepID=E7C598_9BACT
shikimate dehydrogenase
13_2_20cm_scaffold_650_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8609..10285
DNA (1677bp) protein (559aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D9B1_9BACT
13_2_20cm_scaffold_650_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(10412..11737)
DNA (1326bp) protein (442aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=497964 species="Bacteria; Ve
Glutamate--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ9_9BACT
glnS; glutamyl-or glutaminyl-tRNA synthetase
13_2_20cm_scaffold_650_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11854..12753)
DNA (900bp) protein (300aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00054821};; tRNA(Ile)-2-lysyl-cytidine
tRNA(Ile)-lysidine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0P9_9BACT
mesJ; tRNA(Ile)-lysidine synthase MesJ
13_2_20cm_scaffold_650_14
unknown

Not on your lists

12837..13124
DNA (288bp) protein (96aa)

This feature has no annotations

13_2_20cm_scaffold_650_15
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13377..13907
DNA (531bp) protein (177aa)
TetR family transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BGM1_9RHIZ
AcrR protein {ECO:0000313|EMBL:BAQ43945.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
TetR family transcriptional regulator
13_2_20cm_scaffold_650_16
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

13900..15072
DNA (1173bp) protein (391aa)
RND family efflux transporter, MFP subunit n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B3N6_9BACT
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EIQ01878.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae b
RND transporter
13_2_20cm_scaffold_650_17
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15094..16833
DNA (1740bp) protein (580aa)
Efflux pump, RND family, inner membrane protein, AcrB/AcrD/AcrF family n=1 Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AML0_GEOSK
efflux pump, RND family, inner membrane protein, AcrB/AcrD/AcrF family Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
acriflavine resistance protein B
Displaying 17 items

View Taxonomy