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13_2_20cm_scaffold_1069

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1069_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..1157)
DNA (1155bp) protein (385aa)
gspE2; general secretion pathway protein E Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein E, contains GAF domain id=2045751 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
phytochrome sensor protein
13_2_20cm_scaffold_1069_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1248..2648)
DNA (1401bp) protein (467aa)
ferredoxin-NADP reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ferredoxin--NADP(+) reductase id=4040236 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferredoxin-NADP reductase
13_2_20cm_scaffold_1069_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2667..3095)
DNA (429bp) protein (143aa)
CBS domain containing protein id=4040235 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_1069_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3111..4793)
DNA (1683bp) protein (561aa)
methylmalonyl-CoA mutase (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase id=4257366 bin=GWF2_Methylomirabilis_70_14 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1069_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4838..6259)
DNA (1422bp) protein (474aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
phenylacetate--CoA ligase (EC:6.2.1.30)
Phenylacetate--CoA ligase id=3644886 bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
13_2_20cm_scaffold_1069_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6256..6645)
DNA (390bp) protein (130aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalamin B12-binding domain protein id=5018846 bin=GWA2_Methylomirabilis_73_35 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylmalonyl-CoA mutase C-terminal domain-containing protein
13_2_20cm_scaffold_1069_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6784..7110)
DNA (327bp) protein (109aa)
two component sigma-54 specific Fis family transcriptional regulator; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=GWA2_Rokubacteria_73_35_curated
Two component, sigma54 specific, Fis family transcriptional regulator id=4040234 bin=GWA2_Methylomirabilis_73_35 species=Novosphingobium nitrogenifigens genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG)
13_2_20cm_scaffold_1069_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7294..8082)
DNA (789bp) protein (263aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase id=4453410 bin=GWA2_Methylomirabilis_73_35 species=Methanosaeta thermophila genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
uroporphyrin-III C-methyltransferase
13_2_20cm_scaffold_1069_9
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(8057..8902)
DNA (846bp) protein (282aa)
Formate/nitrite transporter n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVT4_OPITP
formate/nitrite transporter
Formate/nitrite transporter {ECO:0000313|EMBL:ACB75020.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / P
13_2_20cm_scaffold_1069_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8922..10796)
DNA (1875bp) protein (625aa)
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1); K00366 ferredoxin-nitrite reductase [EC:1.7.7.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1)
Ferredoxin-nitrite reductase id=4453411 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1069_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11384..11581)
DNA (198bp) protein (66aa)
hypothetical protein id=4040227 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_1069_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11596..12009)
DNA (414bp) protein (138aa)
Aminotransferase class-III id=4040226 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
class III aminotransferase Tax=GWA2_Rokubacteria_73_35_curated
class III aminotransferase
Displaying 12 items

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