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13_2_20cm_scaffold_1081

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1081_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..684
DNA (684bp) protein (228aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFU8_METNO
transposase IS116/IS110/IS902 family protein
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:ACL59658.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" s
13_2_20cm_scaffold_1081_2
unknown

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comp(761..988)
DNA (228bp) protein (76aa)

This feature has no annotations

13_2_20cm_scaffold_1081_3
unknown

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comp(1579..2043)
DNA (465bp) protein (155aa)

This feature has no annotations

13_2_20cm_scaffold_1081_4
unknown

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2608..2766
DNA (159bp) protein (53aa)

This feature has no annotations

13_2_20cm_scaffold_1081_5

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comp(2756..3451)
DNA (696bp) protein (232aa)
Putative uncharacterized protein id=1251357 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Uncharacterized protein {ECO:0000313|EMBL:EQB64220.1}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
hypothetical protein
13_2_20cm_scaffold_1081_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3504..4325
DNA (822bp) protein (274aa)
Putative membrane protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9C0_CARHZ
hypothetical protein; K07090 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_2_20cm_scaffold_1081_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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4322..5104
DNA (783bp) protein (261aa)
hypothetical protein id=14625980 bin=bin7_NC10_sister species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_1081_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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5186..6787
DNA (1602bp) protein (534aa)
oligopeptide/dipeptide ABC transporter peptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein id=14625230 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
oligopeptide/dipeptide ABC transporter peptide-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
oligopeptide/dipeptide ABC transporter peptide-binding protein
13_2_20cm_scaffold_1081_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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6815..7819
DNA (1005bp) protein (335aa)
dipeptide/oligopeptide/nickel ABC transporter permease id=14625229 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
dipeptide/oligopeptide/nickel ABC transporter permease Tax=CSP1_6_Rokubacteria
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_1081_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7819..8721
DNA (903bp) protein (301aa)
ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=CSP1_6_Rokubacteria
ABC transporter permease; K02034 peptide/nickel transport system permease protein id=14625228 bin=bin7_NC10_sister species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10 rbh
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_1081_11
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8751..10154)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae;
histidine kinase n=1 Tax=Methylococcus capsulatus RepID=UPI0002E51322 rbh
sensor histidine kinase
13_2_20cm_scaffold_1081_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10151..10837)
DNA (687bp) protein (229aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036258BA rbh
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL80369.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacte
two-component transcriptional regulator
13_2_20cm_scaffold_1081_13
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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11216..11953
DNA (738bp) protein (246aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I110_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EES51438.1}; TaxID=412449 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrodiazotrophum.;
hypothetical protein
13_2_20cm_scaffold_1081_14
R_Nitrospirae_66_17, Nitrospirae, Bacteria

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12020..12790
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW4_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
13_2_20cm_scaffold_1081_15
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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comp(12847..13428)
DNA (582bp) protein (194aa)
id=14626054 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=14626054 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_1081_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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13656..13970
DNA (315bp) protein (105aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNP-1 like RNA-binding protein id=1884756 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1 like RNA-binding protein
13_2_20cm_scaffold_1081_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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13996..14352
DNA (357bp) protein (119aa)
Putative uncharacterized protein id=5022308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_1081_18
unknown

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15244..15495
DNA (252bp) protein (84aa)

This feature has no annotations

13_2_20cm_scaffold_1081_19
unknown

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15565..15873
DNA (309bp) protein (103aa)

This feature has no annotations

13_2_20cm_scaffold_1081_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(16103..17494)
DNA (1392bp) protein (464aa)
polynucleotide adenylyltransferase/metal dependent phosphohydrolase; K00970 poly(A) polymerase [EC:2.7.7.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase id=1884950 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1081_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(17496..18383)
DNA (888bp) protein (296aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4426872 bin=GWC2_Methylomirabilis_70_16 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein
13_2_20cm_scaffold_1081_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(18477..19919)
DNA (1443bp) protein (481aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase id=1884939 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1081_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(19971..20150)
DNA (180bp) protein (60aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=1884930 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1081_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(20171..20812)
DNA (642bp) protein (214aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LexA repressor id=1884925 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1081_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(20883..21359)
DNA (477bp) protein (159aa)
putative twin-arginine translocation protein TatB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
twin-arginine translocation protein TatB; K03117 sec-independent protein translocase protein TatB id=14627991 bin=bin7_NC10_sister species=Centipeda periodontii genus=Centipeda taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
sec-independent translocation protein mttA/Hcf106
13_2_20cm_scaffold_1081_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(21390..22178)
DNA (789bp) protein (263aa)
phosphotransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable phosphotransferase id=1884917 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphotransferase
13_2_20cm_scaffold_1081_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(22184..22822)
DNA (639bp) protein (213aa)
putative mannosyl transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycogen synthase id=1884913 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycogen synthase
13_2_20cm_scaffold_1081_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(23235..23678)
DNA (444bp) protein (148aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1884909 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sigma-54 dependent DNA-binding response regulator
Displaying 28 items

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