ggKbase home page

13_2_20cm_scaffold_11779

Search features with annotation key words

Displaying 10 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_11779_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..482)
DNA (480bp) protein (160aa)
thiO; glycine oxidase ThiO (EC:1.4.3.19); K03153 glycine oxidase [EC:1.4.3.19] Tax=GWC2_Rokubacteria_70_16_curated
Glycine oxidase ThiO id=4800305 bin=GWC2_Methylomirabilis_70_16 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glycine oxidase ThiO
13_2_20cm_scaffold_11779_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(479..1042)
DNA (564bp) protein (188aa)
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine-phosphate synthase id=5006705 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine-phosphate synthase
13_2_20cm_scaffold_11779_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1090..1788)
DNA (699bp) protein (233aa)
thiG; thiazole synthase; K03149 thiamine biosynthesis ThiG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiazole synthase id=4800301 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thiG; thiamine biosynthesis protein ThiG
13_2_20cm_scaffold_11779_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1842..2048)
DNA (207bp) protein (69aa)
thiamine biosynthesis protein ThiS Tax=GWA2_Rokubacteria_73_35_curated
thiamine biosynthesis protein ThiS id=4426339 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. S9 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur carrier protein ThiS
13_2_20cm_scaffold_11779_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2214..4163)
DNA (1950bp) protein (650aa)
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase id=4426329 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
13_2_20cm_scaffold_11779_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4205..5038)
DNA (834bp) protein (278aa)
peptidase M50 id=24403803 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase M50 Tax=RBG_16_RIF_WS3X_71_46_curated
peptidase M50
13_2_20cm_scaffold_11779_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5035..5634)
DNA (600bp) protein (200aa)
id=24403804 Tax=RBG_16_RIF_WS3X_71_46_curated
id=24403804 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_2_20cm_scaffold_11779_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5717..7732)
DNA (2016bp) protein (672aa)
hypothetical protein; K06888 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4996873 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_11779_9
unknown

Not on your lists

8070..8390
DNA (321bp) protein (107aa)

This feature has no annotations

13_2_20cm_scaffold_11779_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8390..9454
DNA (1065bp) protein (355aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
A/G-specific adenine glycosylase id=3970265 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 10 items

View Taxonomy