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13_2_20cm_scaffold_1381

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1381_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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2..220
DNA (219bp) protein (73aa)
ABC-3 protein; K02075 zinc/manganese transport system permease protein id=14627589 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=CSP1_6_Rokubacteria
13_2_20cm_scaffold_1381_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(208..795)
DNA (588bp) protein (196aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-hydroxyacyl-CoA dehydrogenase id=4741178 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyacyl-CoA dehydrogenase
13_2_20cm_scaffold_1381_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1085..1429)
DNA (345bp) protein (115aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4741179 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1381_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1467..1991)
DNA (525bp) protein (175aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] Tax=GWA2_Rokubacteria_73_35_curated
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase id=3474236 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_1381_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2228..2602
DNA (375bp) protein (125aa)
hypothetical protein id=3474240 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_2_20cm_scaffold_1381_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2655..3314)
DNA (660bp) protein (220aa)
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative hydrolase (HAD superfamily) id=3474242 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
HAD family hydrolase
13_2_20cm_scaffold_1381_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3398..4117)
DNA (720bp) protein (240aa)
echA8_3; enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Enoyl-CoA dehydratase, EchA8_3 id=3474245 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
13_2_20cm_scaffold_1381_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4169..4486)
DNA (318bp) protein (106aa)
rhodanese-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rhodanese domain protein id=3474250 bin=GWA2_Methylomirabilis_73_35 species=Kingella denitrificans genus=Kingella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rhodanese
13_2_20cm_scaffold_1381_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4499..5350)
DNA (852bp) protein (284aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alpha/beta hydrolase fold protein id=3474252 bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
13_2_20cm_scaffold_1381_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5355..6374)
DNA (1020bp) protein (340aa)
D-cysteine desulfhydrase (EC:3.5.99.7); K05396 D-cysteine desulfhydrase [EC:4.4.1.15] Tax=GWA2_Rokubacteria_73_35_curated
D-cysteine desulfhydrase family pyridoxal phosphate-dependent protein (EC:3.5.99.7)
D-cysteine desulfhydrase id=3474352 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_1381_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6388..7341)
DNA (954bp) protein (318aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626058 bin=bin7_NC10_sister species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_2_20cm_scaffold_1381_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7355..8140)
DNA (786bp) protein (262aa)
Family 3 adenylate cyclase id=3474362 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 3 adenylate cyclase Tax=GWA2_Rokubacteria_73_35_curated
family 3 adenylate cyclase
13_2_20cm_scaffold_1381_13
unknown

Not on your lists

comp(8891..8992)
DNA (102bp) protein (34aa)

This feature has no annotations

13_2_20cm_scaffold_1381_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9067..9294
DNA (228bp) protein (76aa)
cytoplasmic protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4894273 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytoplasmic protein
13_2_20cm_scaffold_1381_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9549..10196
DNA (648bp) protein (216aa)
soluble lytic murein transglycosylase (EC:3.2.1.-)
Soluble lytic murein transglycosylase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Soluble lytic murein transglycosylase-like protein id=4894272 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1381_16
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10298..10720
DNA (423bp) protein (141aa)
Hypothetical exported protein id=4478568 bin=GWF2_Nitrospirae_44_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=BJP_IG2102_Syntrophobacterales_60_12
13_2_20cm_scaffold_1381_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10724..11005)
DNA (282bp) protein (94aa)
transcriptional coactivator/pterin dehydratase; K01724 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAX6_THECD
transcriptional coactivator/pterin dehydratase
13_2_20cm_scaffold_1381_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11002..11559)
DNA (558bp) protein (186aa)
HD phosphohydrolase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SH55_9BURK
Uncharacterized protein {ECO:0000313|EMBL:CDX26363.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pluri
hypothetical protein
13_2_20cm_scaffold_1381_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11565..12488)
DNA (924bp) protein (308aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2995738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1381_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

12594..15839
DNA (3246bp) protein (1082aa)
Adenylate/guanylate cyclase id=4600699 bin=GWC2_Methylomirabilis_70_16 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
adenylate/guanylate cyclase Tax=GWC2_Rokubacteria_70_16_curated
adenylate/guanylate cyclase
13_2_20cm_scaffold_1381_21
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15857..16165)
DNA (309bp) protein (103aa)
sulfite dehydrogenase (cytochrome) subunit SorB (EC:1.8.2.1)
putative sulfite:cytochrome c oxidoreductase subunit B Tax=RBG_13_Deltaproteobacteria_52_11_curated
Sulfite:cytochrome c oxidoreductase subunit B id=2992366 bin=GWF2_Geobacter_54_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
13_2_20cm_scaffold_1381_22
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16170..17387)
DNA (1218bp) protein (406aa)
sorA; sulfite:cytochrome C oxidoreductase subunit A (EC:1.8.2.1)
Oxidase {ECO:0000313|EMBL:KGE00083.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
Oxidoreductase molybdopterin binding id=4507361 bin=GWC2_Geobacteraceae_55_20 species=Sulfurihydrogenibium azorense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
13_2_20cm_scaffold_1381_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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17490..17912
DNA (423bp) protein (141aa)
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14626943 bin=bin7_NC10_sister species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ECF subfamily RNA polymerase sigma-24 factor
Displaying 23 items

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