ggKbase home page

13_2_20cm_scaffold_1530

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1530_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1..708
DNA (708bp) protein (236aa)
Putative uncharacterized protein id=4814777 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
13_2_20cm_scaffold_1530_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

705..1136
DNA (432bp) protein (144aa)
Glycosyl transferase id=4814773 bin=GWC2_Methylomirabilis_70_16 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glycosyltransferase Tax=GWA2_Rokubacteria_70_23_curated
glycosyl transferase
13_2_20cm_scaffold_1530_3
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

1144..1875
DNA (732bp) protein (244aa)
Putative uncharacterized protein id=4927186 bin=GWA2_Ignavibacteria_55_11 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
hypothetical protein
13_2_20cm_scaffold_1530_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1885..3645
DNA (1761bp) protein (587aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] id=14625564 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
13_2_20cm_scaffold_1530_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3783..3941
DNA (159bp) protein (53aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] id=14625564 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hyuA; hydantoin utilization N-methylhydantoinase (EC:3.5.2.14)
13_2_20cm_scaffold_1530_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4028..5623
DNA (1596bp) protein (532aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14625563 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
13_2_20cm_scaffold_1530_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5849..6712)
DNA (864bp) protein (288aa)
id=4814771 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4814771 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1530_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6835..8184)
DNA (1350bp) protein (450aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4814770 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Fis family two component sigma-54 specific transcriptional regulator Tax=GWC2_Rokubacteria_70_16_curated
zraR; transcriptional regulatory protein ZraR
13_2_20cm_scaffold_1530_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8312..8644
DNA (333bp) protein (111aa)
Thioredoxin id=4814769 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
trxA; thioredoxin 1, redox factor Tax=GWC2_Rokubacteria_70_16_curated
trxA; thioredoxin 1, redox factor
13_2_20cm_scaffold_1530_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8748..10202
DNA (1455bp) protein (485aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] id=14625549 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
trpE; anthranilate synthase, component I (EC:4.1.3.27)
13_2_20cm_scaffold_1530_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10199..10771
DNA (573bp) protein (191aa)
trpG; anthranilate synthase component II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glutamine amidotransferase of anthranilate synthase (EC:4.1.3.27)
Glutamine amidotransferase of anthranilate synthase id=4771384 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_1530_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10768..11784
DNA (1017bp) protein (339aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase id=1724736 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1530_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11781..13058
DNA (1278bp) protein (426aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4771412 bin=GWC2_Methylomirabilis_70_24 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_scaffold_1530_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13055..14302
DNA (1248bp) protein (416aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3775497 bin=GWF2_Methylomirabilis_70_14 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_1530_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14305..14997
DNA (693bp) protein (231aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dienelactone hydrolase-like enzyme id=1724740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Dienelactone hydrolase family
13_2_20cm_scaffold_1530_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(15106..15579)
DNA (474bp) protein (158aa)
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplQ; 50S ribosomal protein L17
13_2_20cm_scaffold_1530_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15576..16520)
DNA (945bp) protein (315aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 17 items

View Taxonomy