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13_2_20cm_scaffold_1785

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1785_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3..899
DNA (897bp) protein (299aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3708972 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen decarboxylase (URO-D)
13_2_20cm_scaffold_1785_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(880..1275)
DNA (396bp) protein (132aa)
RNP-1 like RNA-binding protein id=3708973 bin=GWA2_Methylomirabilis_73_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative RNA-binding protein RbpA Tax=GWA2_Rokubacteria_73_35_curated
rbpA; RNA-binding protein
13_2_20cm_scaffold_1785_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(1438..2232)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JTG4_9FIRM
Hypothetical exported protein Tax=RBG_13_Acidobacteria_68_16_curated
13_2_20cm_scaffold_1785_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2302..3654)
DNA (1353bp) protein (451aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=14625085 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_2_20cm_scaffold_1785_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3651..4907)
DNA (1257bp) protein (419aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor hybrid histidine kinase id=5037262 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two-component histidine kinase
13_2_20cm_scaffold_1785_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4862..6553)
DNA (1692bp) protein (564aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
multi-sensor hybrid histidine kinase id=14625086 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
histidine kinase dimerisation and phosphoacceptor protein
13_2_20cm_scaffold_1785_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6550..6933)
DNA (384bp) protein (128aa)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81); K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase id=5037264 bin=GWA2_Methylomirabilis_73_35 species=Thaumarchaeota archaeon SCGC AB-539-E09 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1785_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8000..9307)
DNA (1308bp) protein (436aa)
Amidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amidase id=5037265 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Amidase
13_2_20cm_scaffold_1785_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(9421..11271)
DNA (1851bp) protein (617aa)
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; K00547 homocysteine S-methyltransferase [EC:2.1.1.10] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Methylenetetrahydrofolate reductase id=4884112 bin=GWC2_Methylomirabilis_70_24 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase
13_2_20cm_scaffold_1785_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11255..11788)
DNA (534bp) protein (178aa)
shikimate dehydrogenase (EC:1.1.1.25) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Shikimate kinase I (EC:2.7.1.71)
Shikimate kinase id=4780140 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1785_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11882..12604)
DNA (723bp) protein (241aa)
Vitamin B12 dependent methionine synthase activation region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Vitamin B12 dependent methionine synthase id=4780179 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
vitamin B12 dependent methionine synthase
13_2_20cm_scaffold_1785_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12601..13515)
DNA (915bp) protein (305aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homocysteine S-methyltransferase id=4780181 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_1785_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13512..14186)
DNA (675bp) protein (225aa)
methyltransferase cognate corrinoid protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methyltransferase cognate corrinoid protein id=14625094 bin=bin7_NC10_sister species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
methyltransferase cognate corrinoid protein
13_2_20cm_scaffold_1785_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14227..14991
DNA (765bp) protein (255aa)
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative beta-lactamase-like protein id=4780187 bin=GWA2_Methylomirabilis_73_35 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-lactamase
13_2_20cm_scaffold_1785_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15090..16235)
DNA (1146bp) protein (382aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein id=14625100 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative ABC-type transport system, ATPase component
Displaying 15 items

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