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13_2_20cm_scaffold_2042

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2042_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3..503)
DNA (501bp) protein (167aa)
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] id=14625424 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
purB; adenylosuccinate lyase (EC:4.3.2.2)
13_2_20cm_scaffold_2042_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(642..1850)
DNA (1209bp) protein (403aa)
ymxG; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ymxG; hypothetical protein id=14625423 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M16 domain-containing protein
13_2_20cm_scaffold_2042_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1864..2226)
DNA (363bp) protein (121aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnp; polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
13_2_20cm_scaffold_2042_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2181..2789)
DNA (609bp) protein (203aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
13_2_20cm_scaffold_2042_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2782..3879)
DNA (1098bp) protein (366aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase id=1723475 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidiphilium taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_2042_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3989..4258)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=1723473 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S15
13_2_20cm_scaffold_2042_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4385..5302)
DNA (918bp) protein (306aa)
FMN adenylyltransferase; riboflavin kinase (EC:2.7.7.2 2.7.1.26); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Riboflavin biosynthesis protein RibF id=1723429 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
riboflavin kinase/FMN adenylyltransferase
13_2_20cm_scaffold_2042_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5265..6200)
DNA (936bp) protein (312aa)
tRNA pseudouridine synthase b; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=GWA2_Rokubacteria_73_35_curated
tRNA pseudouridine synthase B id=1723427 bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
tRNA pseudouridine synthase B
13_2_20cm_scaffold_2042_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6197..7219)
DNA (1023bp) protein (341aa)
exopolyphosphatase-related proteins; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Exopolyphosphatase-like enzyme id=1723426 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins
13_2_20cm_scaffold_2042_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7216..7569)
DNA (354bp) protein (118aa)
ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosome-binding factor A id=1723425 bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome-binding factor A
13_2_20cm_scaffold_2042_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7569..7856)
DNA (288bp) protein (96aa)
infB; translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=1723424 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2042_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7884..10379)
DNA (2496bp) protein (832aa)
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
infB; translation initiation factor IF-2
13_2_20cm_scaffold_2042_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10364..10702)
DNA (339bp) protein (113aa)
RNA-binding protein; K07742 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative nucleic-acid-binding protein implicated in transcription termination id=1723422 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2042_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10699..11049)
DNA (351bp) protein (117aa)
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor; K02600 N utilization substance protein A Tax=GWA2_Rokubacteria_73_35_curated
Displaying 14 items

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