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13_2_20cm_scaffold_2257

Search features with annotation key words

Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2257_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..584)
DNA (582bp) protein (194aa)
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=GWA2_Rokubacteria_73_35_curated
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit
13_2_20cm_scaffold_2257_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

802..1743
DNA (942bp) protein (314aa)
Intein-containing protein Tax=GWA2_Rokubacteria_73_35_curated
Intein-containing protein id=1906307 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2257_3
unknown

Not on your lists

2282..2629
DNA (348bp) protein (116aa)

This feature has no annotations

13_2_20cm_scaffold_2257_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

2876..4024
DNA (1149bp) protein (383aa)
Sodium/hydrogen exchanger n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SSC5_9BACT
sodium/hydrogen exchanger Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
sodium/hydrogen exchanger
13_2_20cm_scaffold_2257_5
unknown

Not on your lists

comp(3948..4280)
DNA (333bp) protein (111aa)

This feature has no annotations

13_2_20cm_scaffold_2257_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4573..4794
DNA (222bp) protein (74aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_2_20cm_scaffold_2257_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4810..5430)
DNA (621bp) protein (207aa)
hypothetical protein id=1906305 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_2257_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5534..6250)
DNA (717bp) protein (239aa)
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) id=1906303 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_2_20cm_scaffold_2257_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6275..7015)
DNA (741bp) protein (247aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transport system protein id=2475300 bin=GWC2_Methylomirabilis_70_16 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
livG; ABC-type branched-chain amino acid transport systems, ATP-binding protein I
13_2_20cm_scaffold_2257_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7062..7952)
DNA (891bp) protein (297aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type transport system permease protein II (Probable substrates branched-chain/neutral amino acids) 2 id=3209648 bin=GWC2_Methylomirabilis_70_24 species=Marinobacter sp. ELB17 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter
13_2_20cm_scaffold_2257_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7949..8749)
DNA (801bp) protein (267aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid ABC transporter permease protein I id=1906297 bin=GWA2_Methylomirabilis_73_35 species=Haloarcula vallismortis genus=Haloarcula taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_2_20cm_scaffold_2257_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8769..9956)
DNA (1188bp) protein (396aa)
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=2475303 bin=GWC2_Methylomirabilis_70_16 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular ligand-binding receptor
13_2_20cm_scaffold_2257_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10049..11236
DNA (1188bp) protein (396aa)
Formyl-CoA transferase (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F id=14625352 bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
L-carnitine dehydratase/bile acid-inducible protein F Tax=CSP1_6_Rokubacteria
13_2_20cm_scaffold_2257_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11338..11835)
DNA (498bp) protein (166aa)
id=3674960 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3674960 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2257_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12031..12423)
DNA (393bp) protein (131aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UPF0076 protein id=4219924 bin=GWC2_Methylomirabilis_70_24 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
endoribonuclease L-PSP
13_2_20cm_scaffold_2257_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12472..12993)
DNA (522bp) protein (174aa)
carboxymuconolactone decarboxylase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alkylhydroperoxidase id=3879302 bin=GWC2_Methylomirabilis_70_16 species=Mesorhizobium alhagi genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2257_17
unknown

Not on your lists

comp(13030..13287)
DNA (258bp) protein (86aa)

This feature has no annotations

13_2_20cm_scaffold_2257_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13298..14140)
DNA (843bp) protein (281aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3850604 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_2257_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14201..14407)
DNA (207bp) protein (69aa)
id=4918775 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4918775 Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_2257_20
Pseudomonas sp. 20_BN, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14400..14723)
DNA (324bp) protein (108aa)
Tetratricopeptide TPR_2 n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AR68_RUBXD
Putative tetratricopeptide repeat domain protein {ECO:0000313|EMBL:CDZ95242.1}; TaxID=1499686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;"
hypothetical protein
13_2_20cm_scaffold_2257_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14748..15431)
DNA (684bp) protein (228aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3850606 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2257_22
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15511..16473
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036B4495
40-residue yvtn family beta-propeller repeat protein {ECO:0000313|EMBL:EIZ84215.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacte
YVTN family beta-propeller repeat-containing protein
13_2_20cm_scaffold_2257_23
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(16491..17006)
DNA (516bp) protein (172aa)
hypothetical protein id=14429046 bin=bin3_NC10 species=Verrucomicrobium sp. 3C genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
DoxX protein
13_2_20cm_scaffold_2257_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17003..17209)
DNA (207bp) protein (69aa)
Putative F420-dependent enzyme id=4327982 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxamine 5'-phosphate oxidase-like protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_2257_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17166..17801)
DNA (636bp) protein (212aa)
alpha/beta hydrolase family protein Tax=GWA2_Rokubacteria_73_35_curated
alpha/beta hydrolase family protein id=14627252 bin=bin7_NC10_sister species=Nocardiopsis alba genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase family protein
Displaying 25 items

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