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13_2_20cm_scaffold_2649

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2649_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1..444)
DNA (444bp) protein (148aa)
periplasmic solute binding protein; K09815 zinc transport system substrate-binding protein id=14627590 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
periplasmic solute binding protein; K09815 zinc transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
periplasmic solute binding protein
13_2_20cm_scaffold_2649_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(448..1569)
DNA (1122bp) protein (374aa)
acetamidase/formamidase id=14627591 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acetamidase/formamidase Tax=CSP1_6_Rokubacteria
acetamidase/formamidase
13_2_20cm_scaffold_2649_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1610..2842
DNA (1233bp) protein (411aa)
acyl-CoA dehydrogenase, short-chain specific (EC:1.3.99.2) id=14626067 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_2_20cm_scaffold_2649_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2884..3531
DNA (648bp) protein (216aa)
Uncharacterized protein id=4741174 bin=GWA2_Methylomirabilis_73_35 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoribosyltransferase Tax=GWA2_Rokubacteria_73_35_curated
phosphoribosyltransferase
13_2_20cm_scaffold_2649_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3615..4295
DNA (681bp) protein (227aa)
phophonate C-P lyase system transcriptional regulator PhnF, GntR family; K03710 GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, GntR family id=4849826 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative HTH-type transcriptional regulator, GntR family
13_2_20cm_scaffold_2649_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4413..6320
DNA (1908bp) protein (636aa)
hyuA; N-methylhydantoinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
5-oxoprolinase (ATP-hydrolyzing) id=4849827 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
N-methylhydantoinase
13_2_20cm_scaffold_2649_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6393..7133
DNA (741bp) protein (247aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
5-oxoprolinase (EC:3.5.2.9)
13_2_20cm_scaffold_2649_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7082..8083
DNA (1002bp) protein (334aa)
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14] id=14627495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hydantoinase B/oxoprolinase (EC:3.5.2.9)
13_2_20cm_scaffold_2649_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8080..9240
DNA (1161bp) protein (387aa)
Acyl-CoA dehydrogenase domain protein id=3457494 bin=GWF2_Methylomirabilis_70_14 species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain protein Tax=GWA2_Rokubacteria_70_23_curated
acyl-CoA dehydrogenase domain protein
13_2_20cm_scaffold_2649_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9311..10480
DNA (1170bp) protein (390aa)
acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Propanoyl-CoA C-acyltransferase id=4254074 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acetyl-CoA acetyltransferase
13_2_20cm_scaffold_2649_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10761..11369
DNA (609bp) protein (203aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=GWA2_Rokubacteria_70_23_curated
3-hydroxyacyl-CoA dehydrogenase family protein id=4384724 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative 3-hydroxyacyl-CoA dehydrogenase
13_2_20cm_scaffold_2649_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11366..11794
DNA (429bp) protein (143aa)
putative nucleic-acid-binding protein containing a Zn-ribbon Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=4849831 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative nucleic-acid-binding protein containing a Zn-ribbon
13_2_20cm_scaffold_2649_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

11791..12276
DNA (486bp) protein (162aa)
phosphoesterase id=14431491 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
phosphoesterase Tax=CSP1_5_NC10
phosphodiesterase
13_2_20cm_scaffold_2649_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12469..12681
DNA (213bp) protein (71aa)
cobalamin B12-binding domain-containing protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cobalamin B12-binding domain protein id=1703951 bin=GWA2_Methylomirabilis_73_35 species=Thermotoga lettingae genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin B12-binding domain-containing protein
13_2_20cm_scaffold_2649_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12678..14273
DNA (1596bp) protein (532aa)
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] id=14628013 bin=bin7_NC10_sister species=Ferroglobus placidus genus=Ferroglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
methylmalonyl-CoA mutase, large subunit (EC:5.4.99.2)
13_2_20cm_scaffold_2649_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14281..16566
DNA (2286bp) protein (762aa)
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
xanthine dehydrogenase (EC:1.17.1.4)
Xanthine dehydrogenase id=4849835 bin=GWC2_Methylomirabilis_70_16 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_2_20cm_scaffold_2649_17
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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comp(16583..16972)
DNA (390bp) protein (130aa)
PilT protein domain-containing protein id=14629198 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
PilT protein domain-containing protein Tax=CSP1_4_Chloroflexi
PilT protein domain-containing protein
13_2_20cm_scaffold_2649_18
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(16963..17211)
DNA (249bp) protein (83aa)
hypothetical protein Tax=CSP1_4_Chloroflexi
hypothetical protein id=14629199 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
SpoVT/AbrB domain-containing protein
13_2_20cm_scaffold_2649_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

17263..18456
DNA (1194bp) protein (398aa)
Formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase id=1703945 bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2649_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18453..19562
DNA (1110bp) protein (370aa)
Opine dehydrogenase (EC:1.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD-dependent glycerol-3-phosphate dehydrogenase-like protein id=1703904 bin=GWA2_Methylomirabilis_73_35 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative opine dehydrogenase
13_2_20cm_scaffold_2649_21
unknown

Not on your lists

comp(19517..19621)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 21 items

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