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13_2_20cm_scaffold_2909

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2909_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..165
DNA (165bp) protein (55aa)
extradiol ring-cleavage dioxygenase class III protein subunit B; K05713 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [EC:1.13.11.16] Tax=GWA2_Rokubacteria_73_35_curated
Extradiol ring-cleavage dioxygenase class III protein subunit B id=4911279 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
catalytic LigB subunit of aromatic ring-opening dioxygenase family protein
13_2_20cm_scaffold_2909_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

162..377
DNA (216bp) protein (72aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4911278 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2909_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(564..1076)
DNA (513bp) protein (171aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4827669 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2909_4
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

1403..1738
DNA (336bp) protein (112aa)
DNA-directed RNA polymerase subunit omega n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H912_9BRAD
blue (type 1) copper domain protein Tax=RBG_13_Chloroflexi_56_8_curated
blue (type 1) copper domain-containing protein
13_2_20cm_scaffold_2909_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1784..2458
DNA (675bp) protein (225aa)
Uncharacterized protein id=3960154 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_2909_6
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(2520..3245)
DNA (726bp) protein (242aa)
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
OmpA/MotB domain protein id=3338598 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
OmpA/MotB domain-containing protein
13_2_20cm_scaffold_2909_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

3356..3748
DNA (393bp) protein (131aa)
UPF0076 protein id=14626972 bin=bin7_NC10_sister species=Saccharomonospora saliphila genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
UPF0076 protein Tax=CSP1_6_Rokubacteria
UPF0076 protein
13_2_20cm_scaffold_2909_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3762..4988)
DNA (1227bp) protein (409aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Arabinose efflux permease family protein id=4221600 bin=GWA2_Methylomirabilis_73_35 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
major facilitator transporter
13_2_20cm_scaffold_2909_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5130..5729
DNA (600bp) protein (200aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4221598 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2909_10
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(5764..6135)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI0002DDF470
Cupin 2 conserved barrel domain-containing protein
Cupin 2 conserved barrel domain-containing protein {ECO:0000313|EMBL:AIE87486.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;"
13_2_20cm_scaffold_2909_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6164..7057)
DNA (894bp) protein (298aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWC2_Rokubacteria_70_16_curated
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=4849607 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
13_2_20cm_scaffold_2909_12

Not on your lists

7633..8172
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00035D6406
Marine sediment metagenome DNA, contig: S01H1_L00966 {ECO:0000313|EMBL:GAF72826.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
transposase
13_2_20cm_scaffold_2909_13
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

Not on your lists

8276..9388
DNA (1113bp) protein (371aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WXV1_KYRT2
alcohol dehydrogenase zinc-binding domain-containing protein Tax=RBG_13_Chloroflexi_52_14_curated
alcohol dehydrogenase zinc-binding domain-containing protein
13_2_20cm_scaffold_2909_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9422..10531
DNA (1110bp) protein (370aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036AD608 rbh
mandelate racemase/muconate lactonizing protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
mandelate racemase/muconate lactonizing protein
13_2_20cm_scaffold_2909_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10528..10902)
DNA (375bp) protein (125aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4221510 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2909_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10904..11284)
DNA (381bp) protein (127aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4221508 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2909_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

11357..12133
DNA (777bp) protein (259aa)
sorbitol dehydrogenase (EC:1.1.99.21); K08261 D-sorbitol dehydrogenase (acceptor) [EC:1.1.99.21] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000382DFA2
short-chain dehydrogenase
13_2_20cm_scaffold_2909_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12243..13025
DNA (783bp) protein (261aa)
(S)-2-hydroxy-acid oxidase; K00104 glycolate oxidase [EC:1.1.3.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(S)-2-hydroxy-acid oxidase id=2247864 bin=GWA2_Methylomirabilis_73_35 species=Verrucosispora maris genus=Verrucosispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
(S)-2-hydroxy-acid oxidase
Displaying 18 items

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