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13_2_20cm_scaffold_585

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_585_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2..163
DNA (162bp) protein (54aa)
putative hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Amidohydrolase 2 protein id=2312825 bin=GWA2_Methylomirabilis_73_35 species=Ralstonia solanacearum genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative hydrolase
13_2_20cm_scaffold_585_2
unknown

Not on your lists

comp(187..909)
DNA (723bp) protein (241aa)

This feature has no annotations

13_2_20cm_scaffold_585_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(934..1737)
DNA (804bp) protein (268aa)
Dehydrogenase (Modular protein) id=3428787 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces cattleya genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Dehydrogenase Tax=GWC2_Rokubacteria_70_16_curated
short-chain dehydrogenase
13_2_20cm_scaffold_585_4
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2013..3092
DNA (1080bp) protein (360aa)
lactamase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037D5036 rbh
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EHR69601.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bact
beta-lactamase
13_2_20cm_scaffold_585_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

3038..3877
DNA (840bp) protein (280aa)
ABC transporter n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381B34C
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABJ85476.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatu
13_2_20cm_scaffold_585_6
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3874..4575
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036C6460
Putative uncharacterized protein {ECO:0000313|EMBL:EHR69599.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacter
ABC-2 type transporter
13_2_20cm_scaffold_585_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4582..6105
DNA (1524bp) protein (508aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000376BBE2 rbh
ABC-type uncharacterized transporter {ECO:0000313|EMBL:EHR69598.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales ba
hypothetical protein
13_2_20cm_scaffold_585_8
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6090..6653
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035DBDBF
13_2_20cm_scaffold_585_9
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

6650..7741
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003725FFB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH64387.1}; Flags: Precursor;; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus sil
13_2_20cm_scaffold_585_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7749..8486)
DNA (738bp) protein (246aa)
rluD_3; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=GWA2_Rokubacteria_73_35_curated
RNA pseudouridylate synthase id=1890952 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pseudouridine synthase
13_2_20cm_scaffold_585_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8637..9035)
DNA (399bp) protein (133aa)
id=4485920 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4143380 Tax=GWA2_Rokubacteria_70_23_curated
13_2_20cm_scaffold_585_12
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9195..10592
DNA (1398bp) protein (466aa)
family 3 adenylate cyclase Tax=RBG_13_Deltaproteobacteria_49_15_curated
Uncharacterized protein id=2757750 bin=GWC2_Deltaproteobacteria_56_8 species=Alcanivorax pacificus genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
13_2_20cm_scaffold_585_13
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

10589..11365
DNA (777bp) protein (259aa)
Polysaccharide deacetylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF79_9PROT
deacetylase Tax=RBG_13_RIF03_48_7_curated
polysaccharide deacetylase
13_2_20cm_scaffold_585_14
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11362..11532
DNA (171bp) protein (57aa)
Putative polysaccharide deacetylase YxkH {ECO:0000313|EMBL:GAM09395.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="G
13_2_20cm_scaffold_585_15
CG_Desulfarul_01, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11529..12749
DNA (1221bp) protein (407aa)
PREDICTED: protein piccolo-like n=1 Tax=Xenopus tropicalis RepID=UPI00034FD2E9
hypothetical protein Tax=CG_Desulfarul_01
TolA domain-containing protein
13_2_20cm_scaffold_585_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12807..13808)
DNA (1002bp) protein (334aa)
Alcohol dehydrogenase GroES domain protein id=4531413 bin=GWF2_Methylomirabilis_70_14 species=Rhizobium sp. PDO1-076 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
alcohol dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
alcohol dehydrogenase GroES domain-containing protein
13_2_20cm_scaffold_585_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14545..14844)
DNA (300bp) protein (100aa)
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4] Tax=GWC2_Rokubacteria_70_16_curated
Ribonuclease H id=4704588 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribonuclease H
13_2_20cm_scaffold_585_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(15006..15719)
DNA (714bp) protein (238aa)
hypothetical protein id=14627037 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_585_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16061..17911)
DNA (1851bp) protein (617aa)
RNA polymerase sigma factor RpoD id=3357851 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=GWC2_Rokubacteria_70_16_curated
RpoD subfamily RNA polymerase sigma-70 factor
13_2_20cm_scaffold_585_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17904..19772)
DNA (1869bp) protein (623aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA primase id=4785564 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
DNA primase
13_2_20cm_scaffold_585_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19775..22171)
DNA (2397bp) protein (799aa)
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=GWA2_Rokubacteria_73_35_curated
MutS2 protein id=3357842 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
MutS2 family protein
13_2_20cm_scaffold_585_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22238..22432)
DNA (195bp) protein (65aa)
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S21 id=4785572 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsU; 30S ribosomal protein S21
13_2_20cm_scaffold_585_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22563..23807
DNA (1245bp) protein (415aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Transporter, UIT6 family id=4785574 bin=GWA2_Methylomirabilis_73_35 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_2_20cm_scaffold_585_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23827..24351)
DNA (525bp) protein (175aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=GWA2_Rokubacteria_73_35_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4785576 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_585_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(24367..25080)
DNA (714bp) protein (238aa)
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 id=14627044 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
13_2_20cm_scaffold_585_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(25103..26041)
DNA (939bp) protein (313aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=4526388 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_585_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26150..27067)
DNA (918bp) protein (306aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase id=4948657 bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
13_2_20cm_scaffold_585_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27083..27838)
DNA (756bp) protein (252aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4526381 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_585_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27856..29511)
DNA (1656bp) protein (552aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide repeat family protein id=4526378 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_585_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(29508..29981)
DNA (474bp) protein (158aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4526375 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 35 in total

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