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13_2_20cm_scaffold_626

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_626_1
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..102
DNA (102bp) protein (34aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003772CF4
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas
13_2_20cm_scaffold_626_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

142..486
DNA (345bp) protein (115aa)
Putative transcriptional regulator, ArsR family protein id=4759445 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
arsR; putative arsenical resistance operon repressor Tax=GWC2_Rokubacteria_70_16_curated
ArsR family transcriptional regulator
13_2_20cm_scaffold_626_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

506..838
DNA (333bp) protein (111aa)
id=4895587 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626788 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_626_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

862..1146
DNA (285bp) protein (95aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1746143 bin=GWA2_Methylomirabilis_73_35 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_626_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1741..2310
DNA (570bp) protein (190aa)
sugar phosphate permease Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sugar phosphate permease id=3708852 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar phosphate permease
13_2_20cm_scaffold_626_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2335..2949
DNA (615bp) protein (205aa)
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; K03779 L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] Tax=GWA2_Rokubacteria_73_35_curated
Fumarase alpha subunit id=1746141 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
13_2_20cm_scaffold_626_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2946..3185
DNA (240bp) protein (80aa)
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; K03779 L(+)-tartrate dehydratase alpha subunit [EC:4.2.1.32] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Fumarase alpha subunit id=1746141 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
13_2_20cm_scaffold_626_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3182..3895
DNA (714bp) protein (238aa)
class I fumarate hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Tartrate dehydratase beta subunit id=1746139 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
class I fumarate hydratase
13_2_20cm_scaffold_626_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

4130..4330
DNA (201bp) protein (67aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative thioredoxin id=1746135 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_626_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4346..4657
DNA (312bp) protein (104aa)
ccdA; cytochrome c biogenesis protein CcdA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytochrome c biogenesis protein, transmembrane region id=1746132 bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide isomerase
13_2_20cm_scaffold_626_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4714..6183
DNA (1470bp) protein (490aa)
integral membrane sensor signal transduction histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpR family signal transduction histidine kinase
13_2_20cm_scaffold_626_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6176..6856
DNA (681bp) protein (227aa)
OmpR family response regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-binding response regulator id=1746127 bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpR family response regulator
13_2_20cm_scaffold_626_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6890..7837
DNA (948bp) protein (316aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_2_20cm_scaffold_626_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7846..8496
DNA (651bp) protein (217aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_2_20cm_scaffold_626_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8530..9876
DNA (1347bp) protein (449aa)
M16B family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase, m16 (pitrilysin) family (EC:3.4.24.-)
Putative Zn-dependent peptidase id=2640538 bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_626_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9873..11183
DNA (1311bp) protein (437aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Processing peptidase id=2874872 bin=GWC2_Methylomirabilis_70_16 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase, M16 family
13_2_20cm_scaffold_626_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11209..11439)
DNA (231bp) protein (77aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_626_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11634..12566
DNA (933bp) protein (311aa)
lipoprotein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative VacJ-like lipoprotein
13_2_20cm_scaffold_626_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12568..13512
DNA (945bp) protein (315aa)
Putative uncharacterized protein id=3209451 bin=GWC2_Methylomirabilis_70_24 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
cytochrome C
13_2_20cm_scaffold_626_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13649..14995
DNA (1347bp) protein (449aa)
Putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGE3_9BACT rbh
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_2_20cm_scaffold_626_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15287..17155
DNA (1869bp) protein (623aa)
Putative uncharacterized protein id=3461025 bin=GWA2_Methylomirabilis_73_35 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_2_20cm_scaffold_626_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17600..18682
DNA (1083bp) protein (361aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=3461027 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator
13_2_20cm_scaffold_626_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18682..19056
DNA (375bp) protein (125aa)
spo0F; stage 0 sporulation protein F (EC:2.7.3.-); K02490 two-component system, response regulator, stage 0 sporulation protein F Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) id=3461031 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CheY-like receiver protein
13_2_20cm_scaffold_626_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19158..19859
DNA (702bp) protein (234aa)
Methyltransferase type 11 id=3461034 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces hygroscopicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiquinone/menaquinone biosynthesis methyltransferase Tax=GWA2_Rokubacteria_73_35_curated
phosphatidylethanolamine N-methyltransferase
13_2_20cm_scaffold_626_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19944..20666
DNA (723bp) protein (241aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
type 11 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative methyltransferase protein id=3461244 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_626_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20768..21307
DNA (540bp) protein (180aa)
acetyltransferase, ribosomal protein N-acetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3461245 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acetyltransferase, ribosomal protein N-acetylase
Displaying 26 items

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