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13_2_20cm_scaffold_555

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_555_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(3..653)
DNA (651bp) protein (217aa)
Putative lipoprotein, RlpA-like n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEU5_9BACT
putative lipoprotein; K03642 rare lipoprotein A Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative lipoprotein
13_2_20cm_scaffold_555_2
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(658..1068)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEU4_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41753.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_555_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1398..6056)
DNA (4659bp) protein (1553aa)
nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_c
nrdJ; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1)
ribonucleoside diphosphate reductase n=1 Tax=Treponema primitia RepID=UPI00025555A1 rbh
13_2_20cm_scaffold_555_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(6473..6844)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEK3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_2_20cm_scaffold_555_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7048..7341
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEK2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_2_20cm_scaffold_555_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

7418..8635
DNA (1218bp) protein (406aa)
Arabinose efflux permease family protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CD56_DESTA
arabinose efflux permease family protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
arabinose efflux permease family protein
13_2_20cm_scaffold_555_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(8963..9370)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEI8_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41647.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_2_20cm_scaffold_555_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

9483..10829
DNA (1347bp) protein (449aa)
Putative tRNA modifying enzyme, MiaB-like n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEI7_9BACT rbh
putative tRNA modifying enzyme, MiaB-like Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative tRNA modifying enzyme, MiaB-like
13_2_20cm_scaffold_555_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

10823..11218
DNA (396bp) protein (132aa)
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_2_20cm_scaffold_555_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

11226..12632
DNA (1407bp) protein (469aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEI6_9BACT rbh
miaB; isopentenyl-adenosine A37 tRNA methylthiolase MiaB
13_2_20cm_scaffold_555_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(13180..13860)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEI3_9BACT rbh
hypothetical protein; K07501 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_2_20cm_scaffold_555_12
Rivularia sp. PCC 7116, Rivularia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(13943..14491)
DNA (549bp) protein (183aa)
Sortase-like acyltransferase n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8LD41_9CYAN
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AFY55009.1}; TaxID=373994 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Rivularia.;" source="Rivularia sp. PCC 7116.;"
13_2_20cm_scaffold_555_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(14488..14940)
DNA (453bp) protein (151aa)
mutT; mutator protein MutT (EC:3.6.1.-); K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
mutT; mutator protein MutT (EC:3.6.1.-)
Mutator MutT protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEI2_9BACT
13_2_20cm_scaffold_555_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(15099..15839)
DNA (741bp) protein (247aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candi
Endonuclease III n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEI1_9BACT rbh
13_2_20cm_scaffold_555_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(15843..16211)
DNA (369bp) protein (123aa)
Putative Response regulator, CheY-like n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8C3_9BACT
putative CheY-like response regulator
Putative Response regulator, CheY-like {ECO:0000313|EMBL:CBK43755.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;
13_2_20cm_scaffold_555_16
unknown

Not on your lists

comp(16387..16833)
DNA (447bp) protein (149aa)

This feature has no annotations

13_2_20cm_scaffold_555_17
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16859..17152)
DNA (294bp) protein (98aa)
GYD family protein n=1 Tax=Rhizobium giardinii RepID=UPI00036EC0A4
GYD family protein
Uncharacterized protein {ECO:0000313|EMBL:KEC77875.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
13_2_20cm_scaffold_555_18
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


comp(17690..18268)
DNA (579bp) protein (193aa)
rdgB; nucleoside-triphosphatase (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rdgB; nucleoside-triphosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEE0_9BACT
13_2_20cm_scaffold_555_19
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(18426..19169)
DNA (744bp) protein (248aa)
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PED9_9BACT rbh
13_2_20cm_scaffold_555_20
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

19762..20799
DNA (1038bp) protein (346aa)
Response regulator with HD-GYP domain n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PED8_9BACT rbh
response regulator; K07814 putative two-component system response regulator Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
response regulator
13_2_20cm_scaffold_555_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21007..22494)
DNA (1488bp) protein (496aa)
Methionine synthase {ECO:0000313|EMBL:EEF57331.1}; EC=2.1.1.13 {ECO:0000313|EMBL:EEF57331.1};; Flags: Fragment;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales;
metH; methionine synthase (EC:2.1.1.13)
Methionine synthase (Fragment) n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS35_9BACT
Displaying 21 items

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