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13_2_20cm_scaffold_177

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_177_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


1..402
DNA (402bp) protein (134aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) id=14625411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
13_2_20cm_scaffold_177_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

482..949
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP id=1723420 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_177_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

962..2263
DNA (1302bp) protein (434aa)
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor; K02600 N utilization substance protein A Tax=GWA2_Rokubacteria_73_35_curated
transcription termination factor NusA
13_2_20cm_scaffold_177_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2522..3376
DNA (855bp) protein (285aa)
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infB; translation initiation factor IF-2
13_2_20cm_scaffold_177_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3330..5045
DNA (1716bp) protein (572aa)
infB; translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-2
13_2_20cm_scaffold_177_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5099..5311
DNA (213bp) protein (71aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=1723424 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_177_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5311..5658
DNA (348bp) protein (116aa)
rbfA; putative ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Ribosome-binding factor A id=1723425 bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbfA; ribosome-binding factor A
13_2_20cm_scaffold_177_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5702..6601
DNA (900bp) protein (300aa)
exopolyphosphatase-related proteins; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Exopolyphosphatase-like enzyme id=1723426 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins
13_2_20cm_scaffold_177_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6598..7515
DNA (918bp) protein (306aa)
tRNA pseudouridine synthase b; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=GWA2_Rokubacteria_73_35_curated
tRNA pseudouridine synthase B id=1723427 bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase B
13_2_20cm_scaffold_177_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7478..8404
DNA (927bp) protein (309aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=GWA2_Rokubacteria_73_35_curated
Riboflavin biosynthesis protein RibF id=1723429 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin biosynthesis protein RibF
13_2_20cm_scaffold_177_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


8521..8790
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=1723473 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpsO; 30S ribosomal protein S15
13_2_20cm_scaffold_177_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8915..11059
DNA (2145bp) protein (715aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
13_2_20cm_scaffold_177_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11052..12317
DNA (1266bp) protein (422aa)
peptidase M16 domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ymxG; hypothetical protein id=14625423 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ymxG; hypothetical protein
13_2_20cm_scaffold_177_14
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12226..12732)
DNA (507bp) protein (169aa)
Putative metal-dependent hydrolase n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QF79_9FIRM
Cyclase {ECO:0000313|EMBL:EWT06681.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
cyclase family protein
13_2_20cm_scaffold_177_15
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13179..13841)
DNA (663bp) protein (221aa)
GntR family transcriptional regulator n=1 Tax=Thermus islandicus RepID=UPI0003B520FA
Putative HTH-type transcriptional regulator YdfH {ECO:0000313|EMBL:KFB78395.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Acc
GntR family transcriptional regulator
13_2_20cm_scaffold_177_16
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14021..14815
DNA (795bp) protein (265aa)
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QES4_9BRAD
Short-chain dehydrogenase {ECO:0000313|EMBL:KJC48752.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium
short-chain dehydrogenase/reductase SDR
13_2_20cm_scaffold_177_17
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14889..16163
DNA (1275bp) protein (425aa)
Extracellular ligand-binding receptor n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIA8_DESB2 rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
extracellular ligand-binding receptor
13_2_20cm_scaffold_177_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16176..16811
DNA (636bp) protein (212aa)
Uncharacterized protein ycgI n=1 Tax=Marinobacter sp. BSs20148 RepID=M1FDJ9_9ALTE
hypothetical protein; K09967 hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
protein of unknown function DUF1989-containing protein
13_2_20cm_scaffold_177_19
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16821..17699
DNA (879bp) protein (293aa)
Inner-membrane translocator n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIA7_DESB2
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
inner-membrane translocator
13_2_20cm_scaffold_177_20
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17701..18630
DNA (930bp) protein (310aa)
ABC-type transport system permease protein (Probable substrate branched-chain/neutral amino acids) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ILZ2_NATPD
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
abc06p2; branched-chain/neutral amino acids ABC transporter permease
13_2_20cm_scaffold_177_21
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18651..19349
DNA (699bp) protein (233aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
ABC-type branched-chain amino acid transport system, ATPase component id=3434015 bin=GWF2_Methylomirabilis_70_14 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_2_20cm_scaffold_177_22
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19342..20064
DNA (723bp) protein (241aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
ABC transporter ATP-binding protein id=1703882 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LivF; ABC-type branched-chain amino acid transport systems, ATPase component
13_2_20cm_scaffold_177_23
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20077..21048
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HX69_9BURK
hypothetical protein Tax=RBG_13_Deltaproteobacteria_47_9_curated
hypothetical protein
13_2_20cm_scaffold_177_24
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21045..21494
DNA (450bp) protein (150aa)
Tripartite tricarboxylate transporter TctB family Tax=RBG_13_Deltaproteobacteria_52_11b_curated
Putative uncharacterized protein id=4827672 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces bingchenggensis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tripartite tricarboxylate transporter TctB family
13_2_20cm_scaffold_177_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21500..23014
DNA (1515bp) protein (505aa)
hypothetical protein; K07793 putative tricarboxylic transport membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Tricarboxylate transport membrane protein id=3932087 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_177_26
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23027..24433
DNA (1407bp) protein (469aa)
UbiD family decarboxylase n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00037380F6
UbiD family decarboxylase Tax=RBG_16_Deltaproteobacteria_48_10_curated
UbiD family decarboxylase
13_2_20cm_scaffold_177_27
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

24438..25316
DNA (879bp) protein (293aa)
carbon monoxide dehydrogenase (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] Tax=CSP1_3_Armatimonadetes
Molybdopterin dehydrogenase FAD-binding protein id=2145514 bin=GWD2_Deltaproteobacteria_55_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria rbh
molybdopterin dehydrogenase FAD-binding protein
13_2_20cm_scaffold_177_28
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25313..25804
DNA (492bp) protein (164aa)
Aldehyde oxidase small subunit n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KYN1_THERP
(2Fe-2S)-binding protein {ECO:0000313|EMBL:ETW96851.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
aldehyde oxidase small subunit
13_2_20cm_scaffold_177_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25801..26790
DNA (990bp) protein (330aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
13_2_20cm_scaffold_177_30
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26790..27524
DNA (735bp) protein (245aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXE8_9RHIZ
ABC transporter inner membrane protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
ABC transporter inner membrane protein
Displaying items 1-30 of 37 in total

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